Nitrogenase 3D structures: Difference between revisions

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{{#tree:id=OrganizedByTopic|openlevels=0|
{{#tree:id=OrganizedByTopic|openlevels=0|


*Nase Mo-Fe
*Nase Mo-Fe protein


**[[3pdi]] – AvNase α+β subunit [Fe4S4 Fe8S9] – ''Azotobacter vinelandii''<br />
**[[3k1a]], [[1m1n]], [[2min]], [[3min]], [[3u7q]] – AvNase + subunit [CFe7MoS9 Fe8S7] - ''Azotobacter vinelandii''<br />
**[[2kic]] – AvNase γ subunit – NMR<br />
**[[7jrf]] - AvNase + subunit [CFe7MoS9 Fe8S7] + CO<br />
**[[3k1a]], [[1m1n]], [[2min]], [[3min]], [[3u7q]] – AvNase α+β subunit [CFe7MoS9 Fe8S7]<br />
**[[4xpi]], [[5cx1]], [[7mci]] - AvNase + (mutant) subunit [CFe7MoS9 Fe8S7]<br />
**[[4xpi]], [[5cx1]] - AvNase + (mutant) subunit [CFe7MoS9 Fe8S7]<br />
**[[4tku]], [[5bvg]] - AvNase + subunit [CFe7MoS9 Fe8S7 Fe2]<br />
**[[4tku]], [[5bvg]] - AvNase α+β subunit [CFe7MoS9 Fe8S7 Fe2]<br />
**[[8bts]], [[8e3v]] - AvNase + (mutant) subunit [CFe7MoS9 Fe8S7 Fe2]<br />
**[[6o7o]], [[6o7m]], [[6o7l]], [[6o7p]], [[6o7q]], [[6o7r]] - AvNase + (mutant) subunit [CFe7MoS9 Fe8S7 Fe2]<br />
**[[8dby]], [[8dpn]] - AvNase + subunit [CFe7MoS9 Fe8S7 Fe2] - Cryo EM<br />
**[[8e3u]] - AvNase + subunit [CFe7MoS9 Fe7S7 Fe2]<br />
**[[8e3t]] - AvNase + (mutant) subunit [CFe7MoS9 Fe7S7 Fe2]<br />
**[[6o7o]], [[6o7m]], [[6o7l]], [[6o7p]], [[6o7q]], [[6o7r]], [[7ut6]] - AvNase + (mutant) subunit [CFe7MoS9 Fe8S7 Fe2]<br />
**[[6o7s]] - AvNase + (mutant) subunit [CFe7MoS9 Fe6S7 Fe2]<br />
**[[6o7s]] - AvNase + (mutant) subunit [CFe7MoS9 Fe6S7 Fe2]<br />
**[[6op3]], [[6op4]] - AvNase + subunit [CFe7MoS9 Fe8S7 Mg] <br />
**[[6op3]], [[6op4]] - AvNase + subunit [CFe7MoS9 Fe8S7 Mg] <br />
**[[4tkv]], [[5bvh]]- AvNase α+β subunit [CFe7MoS9 Fe8S7 Fe2] + CO <br />
**[[4tkv]], [[5bvh]] - AvNase + subunit [CFe7MoS9 Fe8S7 Fe2] + CO <br />
**[[6op1]] - AvNase + subunit [CFe7MoS9 Fe8S7 Mg] + CO <br />
**[[7ut7]], [[8crs]], [[8dbx]], [[8enl]], [[8enm]], [[8enn]] - AvNase + subunit [CFe7MoS9 Fe8S7 Fe2] – Cryo EM<br />
**[[6op2]], [[6op3]] - AvNase + subunit [CFe7MoS9 Fe8S7 Se<br />
**[[6op1]], [[7jrf]] - AvNase + subunit [CFe7MoS9 Fe8S7 Mg] + CO <br />
**[[4wza]] - AvNase α+β subunit [CFe7MoS9 Fe8S7 Fe4S4 Fe2] + ADP + ACP<br />
**[[6op2]], [[60p3]] - AvNase + subunit [CFe7MoS9 Fe8S7 Se] <br />
**[[4wzb]] - AvNase α+β subunit [CFe7MoS9 Fe8S7 Fe4S4 Fe2] + ACP<br />
[[4nd8]], [[6bbl]], [[6cdk]], [[6vxt]] - AvNase + subunit [CFe7MoS9 Fe8S7 Fe+3]<br />
**[[4nd8]], [[6bbl]], [[6cdk]], [[6vxt]] - AvNase α+β subunit [CFe7MoS9 Fe8S7 Fe+3]<br />
**[[6o7n]] - AvNase + subunit (mutant) [CFe7MoS9 Fe8S7 Fe+3]<br />
**[[6o7n]] - AvNase + subunit (mutant) [CFe7MoS9 Fe8S7 Fe+3]<br />
**[[6ug0]] - AvNase + subunit (mutant) [CFe7MoS9 Fe8S7 Fe+3] + N2<br />
**[[6ug0]] - AvNase + subunit (mutant) [CFe7MoS9 Fe8S7 Fe+3] + N2<br />
**[[1l5h]] - AvNase α+β subunit [Fe8S7]<br />
**[[1fp4]] - AvNase + subunit (mutant) [Fe7MoS9 Fe8S8] <br />
**[[1h1l]], [[1qgu]], [[1qh8]] - KpNase α+β subunit [Fe7MoS9 Fe8S7] – ''Klebsiella pneumoniae''<br />
**[[1l5h]] - AvNase + subunit [Fe8S7] <br />
**[[1qh1]] - KpNase α+β subunit + iron protein 1 [Fe7MoS9 Fe8S7]<br />
**[[1h1l]], [[1qgu]], [[1qh8]] - KpNase + subunit [Fe7MoS9 Fe8S7] – ''Klebsiella pneumoniae''<br />
**[[1fp4]] - AvNase α+β subunit (mutant) [Fe7MoS9 Fe8S8]<br />
**[[1qh1]] - KpNase + subunit [Fe7MoS9 Fe8S7] <br />
**[[1mio]] - CpNase α+β subunit (mutant) [Fe7MoS9 Fe8S8] - ''Clostridium pasteurianum''<br />
**[[1mio]] - CpNase + subunit (mutant) [Fe7MoS9 Fe8S8] - ''Clostridium pasteurianum''<br />
**[[4wes]], [[4wn9]], [[4wna]], [[5vpw]], [[5vq3]], [[5vq4]] - CpNase α+β subunit [CFe7MoS9 Fe8S7 Fe2]<br />
**[[4wes]], [[4wn9]], [[4wna]], [[5vpw]], [[5vq3]], [[5vq4]] - CpNase + subunit [CFe7MoS9 Fe8S7 Fe2]<br />
**[[2afh]], [[1m1y]], [[1g20]] - AvNase α+β subunit + iron protein 1 [Fe4S4 Fe7MoS9 Fe8S7]<br />
 
**[[2afi]], [[4wzb]], [[1m34]], [[1g21]] - AvNase α+β subunit + iron protein 1 [Fe4S4 Fe7MoS9 Fe8S7] + nucleotide<br />
**[[1n2c]] - AvNase α+β subunit + iron protein 1 [Fe4S4 Fe7MoS9 Fe8S7] + AlF4<br />
**[[5koh]], [[5koj]] – AvNase + subunit iron protein 1 [FeS] [CFe7MoS9 Fe8S7 Fe2] – ''Gluconacetobacter diazotrophicus'' <br />
**[[7jma]] - MtNase – ''Methanothermobacter thermautotropicus''<br />


*Nase iron protein
*Nase iron protein 1


**[[2c8v]] – AvNase iron protein 1 [FeS]<br />
**[[2c8v]], [[5koh]], [[5koj]] – AvNase + subunit iron protein 1 [FeS]<br />
**[[1g1m]], [[1g5p]], [[2nip]], [[6o0b]], [[6n4k]], [[6n4j]] - AvNase iron protein 1 [Fe4S4]<br />
**[[1g1m]], [[1g5p]], [[2nip]], [[6o0b]], [[6n4k]], [[6n4j]], [[7tpy]] - AvNase iron protein 1 [Fe4S4] <br />
**[[1fp6]], [[1nip]], [[6n4m]], [[6n4l]] - AvNase iron protein 1 [Fe4S4] + ADP<br />
**[[1xcp]], [[1xd8]], [[1xdb]], [[1rw4]], [[1de0]] - AvNase iron protein 1 (mutant) [Fe4S4] <br />
**[[1xcp]], [[1xd8]], [[1xdb]], [[1rw4]], [[1de0]] - AvNase iron protein 1 (mutant) [Fe4S4]<br />
**[[1fp6]], [[1nip]], [[6n4m]], [[6n4l]], [[7tpv]],[[7tpw]],  [[7tpx]], [[7tpz]], [[7tqj]] - AvNase iron protein 1 [Fe4S4] + ADP<br />
**[[7t4h]],[[7tne]],  [[7tpo]], [[7tq0]], [[7q9]], [[7tqe]], [[7tqf]], [[7tqh]], [[7tqi]], [[7tqk]], [[7tpn]] - AvNase + subunit  [Fe4S4 Fe4Se4] + ADP<br />
**[[8boq]] - AvNase + subunit  [Fe8S9 Fe8S7] + O<br />
**[[6q93]] - AvNase iron protein 1 [Fe4S4] + MgADP<br />
**[[6q93]] - AvNase iron protein 1 [Fe4S4] + MgADP<br />
**[[7qqa]] - AvNase iron protein 1 (mutant) [Fe4S4] + MgADP<br />
**[[1xd9]] - AvNase iron protein 1 (mutant) [Fe4S4] + MgADP<br />
**[[1xd9]] - AvNase iron protein 1 (mutant) [Fe4S4] + MgADP<br />
**[[1cp2]] - CpNase iron protein 1 [Fe4S4] <br />
**[[1cp2]] - CpNase iron protein 1 [Fe4S4] <br />
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**[[7bi7]] - MtNase [Fe4S4 Fe8S7] <br />
**[[7bi7]] - MtNase [Fe4S4 Fe8S7] <br />


*Nase V-Fe protein
*Nase Mo-Fe protein complex with Nase iron protein 1
 
**[[7uta]], [[8dfc]], [[8dfd]] - AvNase + subunit [CFe7MoS9 Fe8S7 Fe2] + iron protein 1 [Fe4S4] + ADP<br />
**[[7ut8]], [[7ut9]] - AvNase + subunit [CFe7MoS9 Fe8S7 Fe2] + iron protein 1 [Fe4S4] + ATP – Cryo EM<br />
**[[4wza]] - AvNase + subunit [CFe7MoS9 Fe8S7 Fe2] + iron protein 1 [Fe4S4] + ADP + ACP<br />
**[[4wzb]] - AvNase + subunit [CFe7MoS9 Fe8S7 Fe2] + iron protein 1 [Fe4S4] + ACP<br />
**[[2afh]], [[1m1y]], [[1g20]] - AvNase + subunit Fe7MoS9 Fe8S7]] + iron protein 1 [Fe4S4]<br />
**[[2afi]], [[4wzb]], [[1m34]]. [[1g21]] - AvNase + subunit [Fe7MoS9 Fe8S7] + iron protein 1 [Fe4S4] + nucleotide<br />
**[[1n2c]] - AvNase + subunit [Fe7MoS9 Fe8S7] + iron protein 1 [Fe4S4] + AlF4<br />
 
* Nase V-Fe protein


**[[5n6y]], [[6fea]] – AvNase  ++d subunit [C-Fe7-N-S7-V  + Fe8-S7] + CO3<br />
**[[5n6y]], [[6fea]] – AvNase  ++d subunit [C-Fe7-N-S7-V  + Fe8-S7] + CO3<br />
**[[7adr]], [[7aiz]] – AvNase  ++d subunit [C-Fe7-N-S7-V  + Fe8-S7] + CO3 + CO<br />
**[[7adr]], [[7aiz]] – AvNase  ++d subunit [C-Fe7-N-S7-V  + Fe8-S7] + CO3 + CO<br />
**[[7ady]] – AvNase  ++d subunit [C-Fe7-N-S7-V ] <br />
**[[7ady]] – AvNase  ++d subunit [C-Fe7-N-S7-V ] <br />
**[[2kic]] – AvNase  subunit – NMR<br />
**[[7jma]] - MtNase – ''Methanothermobacter thermautotropicus''<br />


}}
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[[Category:Topic Page]]
[[Category:Topic Page]]

Revision as of 07:14, 19 July 2023

3D structure of Nitrogenase

Updated on 19-July-2023 

4nd8, 6bbl, 6cdk, 6vxt - AvNase + subunit [CFe7MoS9 Fe8S7 Fe+3]
    • 6o7n - AvNase + subunit (mutant) [CFe7MoS9 Fe8S7 Fe+3]
    • 6ug0 - AvNase + subunit (mutant) [CFe7MoS9 Fe8S7 Fe+3] + N2
    • 1fp4 - AvNase + subunit (mutant) [Fe7MoS9 Fe8S8]
    • 1l5h - AvNase + subunit [Fe8S7]
    • 1h1l, 1qgu, 1qh8 - KpNase + subunit [Fe7MoS9 Fe8S7] – Klebsiella pneumoniae
    • 1qh1 - KpNase + subunit [Fe7MoS9 Fe8S7]
    • 1mio - CpNase + subunit (mutant) [Fe7MoS9 Fe8S8] - Clostridium pasteurianum
    • 4wes, 4wn9, 4wna, 5vpw, 5vq3, 5vq4 - CpNase + subunit [CFe7MoS9 Fe8S7 Fe2]
  • Nase iron protein 1
  • Nase Mo-Fe protein complex with Nase iron protein 1
    • 7uta, 8dfc, 8dfd - AvNase + subunit [CFe7MoS9 Fe8S7 Fe2] + iron protein 1 [Fe4S4] + ADP
    • 7ut8, 7ut9 - AvNase + subunit [CFe7MoS9 Fe8S7 Fe2] + iron protein 1 [Fe4S4] + ATP – Cryo EM
    • 4wza - AvNase + subunit [CFe7MoS9 Fe8S7 Fe2] + iron protein 1 [Fe4S4] + ADP + ACP
    • 4wzb - AvNase + subunit [CFe7MoS9 Fe8S7 Fe2] + iron protein 1 [Fe4S4] + ACP
    • 2afh, 1m1y, 1g20 - AvNase + subunit Fe7MoS9 Fe8S7]] + iron protein 1 [Fe4S4]
    • 2afi, 4wzb, 1m34. 1g21 - AvNase + subunit [Fe7MoS9 Fe8S7] + iron protein 1 [Fe4S4] + nucleotide
    • 1n2c - AvNase + subunit [Fe7MoS9 Fe8S7] + iron protein 1 [Fe4S4] + AlF4
  • Nase V-Fe protein
    • 5n6y, 6fea – AvNase ++d subunit [C-Fe7-N-S7-V + Fe8-S7] + CO3
    • 7adr, 7aiz – AvNase ++d subunit [C-Fe7-N-S7-V + Fe8-S7] + CO3 + CO
    • 7ady – AvNase ++d subunit [C-Fe7-N-S7-V ]
    • 2kic – AvNase subunit – NMR
    • 7jma - MtNase – Methanothermobacter thermautotropicus

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Michal Harel

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