3dcp: Difference between revisions

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<StructureSection load='3dcp' size='340' side='right'caption='[[3dcp]], [[Resolution|resolution]] 2.10&Aring;' scene=''>
<StructureSection load='3dcp' size='340' side='right'caption='[[3dcp]], [[Resolution|resolution]] 2.10&Aring;' scene=''>
== Structural highlights ==
== Structural highlights ==
<table><tr><td colspan='2'>[[3dcp]] is a 3 chain structure with sequence from [https://en.wikipedia.org/wiki/Listeria_monocytogenes_serotype_4b_str._h7858 Listeria monocytogenes serotype 4b str. h7858]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3DCP OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=3DCP FirstGlance]. <br>
<table><tr><td colspan='2'>[[3dcp]] is a 3 chain structure with sequence from [https://en.wikipedia.org/wiki/Listeria_monocytogenes_serotype_4b_str._H7858 Listeria monocytogenes serotype 4b str. H7858]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3DCP OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=3DCP FirstGlance]. <br>
</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=FE:FE+(III)+ION'>FE</scene>, <scene name='pdbligand=ZN:ZINC+ION'>ZN</scene></td></tr>
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 2.1&#8491;</td></tr>
<tr id='NonStdRes'><td class="sblockLbl"><b>[[Non-Standard_Residue|NonStd Res:]]</b></td><td class="sblockDat"><scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene></td></tr>
<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=FE:FE+(III)+ION'>FE</scene>, <scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene>, <scene name='pdbligand=ZN:ZINC+ION'>ZN</scene></td></tr>
<tr id='related'><td class="sblockLbl"><b>[[Related_structure|Related:]]</b></td><td class="sblockDat"><div style='overflow: auto; max-height: 3em;'>[[2z4g|2z4g]], [[2yz5|2yz5]], [[2yxo|2yxo]]</div></td></tr>
<tr id='gene'><td class="sblockLbl"><b>[[Gene|Gene:]]</b></td><td class="sblockDat">hisK, LMOh7858_0629 ([https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=267410 Listeria monocytogenes serotype 4b str. H7858])</td></tr>
<tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[https://en.wikipedia.org/wiki/Histidinol-phosphatase Histidinol-phosphatase], with EC number [https://www.brenda-enzymes.info/php/result_flat.php4?ecno=3.1.3.15 3.1.3.15] </span></td></tr>
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=3dcp FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3dcp OCA], [https://pdbe.org/3dcp PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=3dcp RCSB], [https://www.ebi.ac.uk/pdbsum/3dcp PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=3dcp ProSAT], [https://www.topsan.org/Proteins/NESGC/3dcp TOPSAN]</span></td></tr>
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=3dcp FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3dcp OCA], [https://pdbe.org/3dcp PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=3dcp RCSB], [https://www.ebi.ac.uk/pdbsum/3dcp PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=3dcp ProSAT], [https://www.topsan.org/Proteins/NESGC/3dcp TOPSAN]</span></td></tr>
</table>
</table>
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   <jmolCheckbox>
   <jmolCheckbox>
     <scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/dc/3dcp_consurf.spt"</scriptWhenChecked>
     <scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/dc/3dcp_consurf.spt"</scriptWhenChecked>
     <scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
     <scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview03.spt</scriptWhenUnchecked>
     <text>to colour the structure by Evolutionary Conservation</text>
     <text>to colour the structure by Evolutionary Conservation</text>
   </jmolCheckbox>
   </jmolCheckbox>
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__TOC__
__TOC__
</StructureSection>
</StructureSection>
[[Category: Histidinol-phosphatase]]
[[Category: Large Structures]]
[[Category: Large Structures]]
[[Category: Listeria monocytogenes serotype 4b str. h7858]]
[[Category: Listeria monocytogenes serotype 4b str. H7858]]
[[Category: Acton, T B]]
[[Category: Acton TB]]
[[Category: Baran, M C]]
[[Category: Baran MC]]
[[Category: Foote, E L]]
[[Category: Foote EL]]
[[Category: Hunt, J F]]
[[Category: Hunt JF]]
[[Category: Mao, L]]
[[Category: Mao L]]
[[Category: Montelione, G T]]
[[Category: Montelione GT]]
[[Category: Structural genomic]]
[[Category: Nair R]]
[[Category: Nair, R]]
[[Category: Rost B]]
[[Category: Rost, B]]
[[Category: Seetharaman J]]
[[Category: Seetharaman, J]]
[[Category: Su M]]
[[Category: Su, M]]
[[Category: Tong L]]
[[Category: Tong, L]]
[[Category: Vorobiev SM]]
[[Category: Vorobiev, S M]]
[[Category: Xiao R]]
[[Category: Xiao, R]]
[[Category: Zhao L]]
[[Category: Zhao, L]]
[[Category: Hisk]]
[[Category: Histidine biosynthesis]]
[[Category: Histidinol phosphatase]]
[[Category: Hydrolase]]
[[Category: Lmr141]]
[[Category: Nesg]]
[[Category: PSI, Protein structure initiative]]