Biological Unit: Difference between revisions

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Eric Martz (talk | contribs)
Eric Martz (talk | contribs)
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4, 4, 2, 2
4**, 4*, 2, 2
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[[3dxp]]<br>[[1hho]]<br>[[3dxr]]
[[3dxp]]<br>[[1hho]]<br>[[3dxr]]
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&nbsp;* The contacts in the biological unit differ from those in the asymmetric unit.
&nbsp;* The contacts in this biological unit differ from those in the asymmetric unit.
<br>**The "author specified" homodimer (in this case the same as the [[asymmetric unit]]) appears unlikely in view of the homodimer predicted by [[#Protein Interfaces, Surfaces and Assemblies Server (PISA)|PISA]] and [[#Probable Quaternary Structure Server (PQS)|PQS]], which has a much larger buried surface area.
<br>**The "author specified" assembly (in this case the same as the [[asymmetric unit]]) appears unlikely in view of the assembly predicted by [[#Protein Interfaces, Surfaces and Assemblies Server (PISA)|PISA]], which has a much larger buried surface area.
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Truncated proteins may form oligomers that are impossible in the native protein. For example, [[1bk5]] (karyopherin alpha) is a truncated part of the natural chain, and forms a dimer that would be prevented by the full-length chain. Dimerization is dependent upon Y397. Mutation Y397D prevents this artifactual dimerization, leading to the monomer [[1ee5]].
Truncated proteins may form oligomers that are impossible in the native protein. For example, [[1bk5]] (karyopherin alpha) is a truncated part of the natural chain, and forms a dimer that would be prevented by the full-length chain. Dimerization is dependent upon Y397. Mutation Y397D prevents this artifactual dimerization, leading to the monomer [[1ee5]].