3dwp: Difference between revisions

From Proteopedia
Jump to navigationJump to search
← Older edit
OCA (talk | contribs)
Bots, Bureaucrats, journal, Administrators
3,328,572 edits
No edit summary
OCA (talk | contribs)
Bots, Bureaucrats, journal, Administrators
3,328,572 edits
No edit summary
 
Line 3: Line 3:
<StructureSection load='3dwp' size='340' side='right'caption='[[3dwp]], [[Resolution|resolution]] 2.20&Aring;' scene=''>
<StructureSection load='3dwp' size='340' side='right'caption='[[3dwp]], [[Resolution|resolution]] 2.20&Aring;' scene=''>
== Structural highlights ==
== Structural highlights ==
<table><tr><td colspan='2'>[[3dwp]] is a 5 chain structure with sequence from [https://en.wikipedia.org/wiki/"bacillus_coli"_migula_1895 "bacillus coli" migula 1895]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3DWP OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=3DWP FirstGlance]. <br>
<table><tr><td colspan='2'>[[3dwp]] is a 5 chain structure with sequence from [https://en.wikipedia.org/wiki/Escherichia_coli Escherichia coli]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3DWP OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=3DWP FirstGlance]. <br>
</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=1PE:PENTAETHYLENE+GLYCOL'>1PE</scene>, <scene name='pdbligand=NGC:3,5-DIDEOXY-5-[(HYDROXYACETYL)AMINO]-D-GLYCERO-ALPHA-D-GALACTO-NON-2-ULOPYRANOSONIC+ACID'>NGC</scene></td></tr>
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 2.2&#8491;</td></tr>
<tr id='related'><td class="sblockLbl"><b>[[Related_structure|Related:]]</b></td><td class="sblockDat"><div style='overflow: auto; max-height: 3em;'>[[3dwa|3dwa]], [[3dwq|3dwq]]</div></td></tr>
<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=1PE:PENTAETHYLENE+GLYCOL'>1PE</scene>, <scene name='pdbligand=NGC:3,5-DIDEOXY-5-[(HYDROXYACETYL)AMINO]-D-GLYCERO-ALPHA-D-GALACTO-NON-2-ULOPYRANOSONIC+ACID'>NGC</scene></td></tr>
<tr id='gene'><td class="sblockLbl"><b>[[Gene|Gene:]]</b></td><td class="sblockDat">subB ([https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=562 "Bacillus coli" Migula 1895])</td></tr>
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=3dwp FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3dwp OCA], [https://pdbe.org/3dwp PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=3dwp RCSB], [https://www.ebi.ac.uk/pdbsum/3dwp PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=3dwp ProSAT]</span></td></tr>
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=3dwp FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3dwp OCA], [https://pdbe.org/3dwp PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=3dwp RCSB], [https://www.ebi.ac.uk/pdbsum/3dwp PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=3dwp ProSAT]</span></td></tr>
</table>
</table>
== Function ==
[https://www.uniprot.org/uniprot/Q3ZTX8_ECOLX Q3ZTX8_ECOLX]
== Evolutionary Conservation ==
== Evolutionary Conservation ==
[[Image:Consurf_key_small.gif|200px|right]]
[[Image:Consurf_key_small.gif|200px|right]]
Line 14: Line 15:
   <jmolCheckbox>
   <jmolCheckbox>
     <scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/dw/3dwp_consurf.spt"</scriptWhenChecked>
     <scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/dw/3dwp_consurf.spt"</scriptWhenChecked>
     <scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
     <scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview03.spt</scriptWhenUnchecked>
     <text>to colour the structure by Evolutionary Conservation</text>
     <text>to colour the structure by Evolutionary Conservation</text>
   </jmolCheckbox>
   </jmolCheckbox>
Line 32: Line 33:
__TOC__
__TOC__
</StructureSection>
</StructureSection>
[[Category: Bacillus coli migula 1895]]
[[Category: Escherichia coli]]
[[Category: Large Structures]]
[[Category: Large Structures]]
[[Category: Beddoe, T]]
[[Category: Beddoe T]]
[[Category: Byres, E]]
[[Category: Byres E]]
[[Category: Chen, X]]
[[Category: Chen X]]
[[Category: Chong, D C]]
[[Category: Chong DC]]
[[Category: Huang, S]]
[[Category: Huang S]]
[[Category: Lofling, J C]]
[[Category: Lofling JC]]
[[Category: Paton, A W]]
[[Category: Paton AW]]
[[Category: Paton, J C]]
[[Category: Paton JC]]
[[Category: Rossjohn, J]]
[[Category: Rossjohn J]]
[[Category: Smith, D F]]
[[Category: Smith DF]]
[[Category: Talbot, U M]]
[[Category: Talbot UM]]
[[Category: Varki, A]]
[[Category: Varki A]]
[[Category: Varki, N M]]
[[Category: Varki NM]]
[[Category: Wilce, M C.J]]
[[Category: Wilce MCJ]]
[[Category: Yu, H]]
[[Category: Yu H]]
[[Category: Toxin]]
Retrieved from "https://proteopedia.org/3dwp"