4jqo: Difference between revisions

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<StructureSection load='4jqo' size='340' side='right'caption='[[4jqo]], [[Resolution|resolution]] 2.08&Aring;' scene=''>
<StructureSection load='4jqo' size='340' side='right'caption='[[4jqo]], [[Resolution|resolution]] 2.08&Aring;' scene=''>
== Structural highlights ==
== Structural highlights ==
<table><tr><td colspan='2'>[[4jqo]] is a 3 chain structure with sequence from [https://en.wikipedia.org/wiki/Vibvu Vibvu]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=4JQO OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=4JQO FirstGlance]. <br>
<table><tr><td colspan='2'>[[4jqo]] is a 3 chain structure with sequence from [https://en.wikipedia.org/wiki/Vibrio_vulnificus_CMCP6 Vibrio vulnificus CMCP6]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=4JQO OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=4JQO FirstGlance]. <br>
</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=CIR:CITRULLINE'>CIR</scene>, <scene name='pdbligand=CL:CHLORIDE+ION'>CL</scene>, <scene name='pdbligand=PEG:DI(HYDROXYETHYL)ETHER'>PEG</scene>, <scene name='pdbligand=PO4:PHOSPHATE+ION'>PO4</scene></td></tr>
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 2.082&#8491;</td></tr>
<tr id='related'><td class="sblockLbl"><b>[[Related_structure|Related:]]</b></td><td class="sblockDat"><div style='overflow: auto; max-height: 3em;'>[[4h31|4h31]], [[4jfr|4jfr]], [[4jhx|4jhx]]</div></td></tr>
<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=CIR:CITRULLINE'>CIR</scene>, <scene name='pdbligand=CL:CHLORIDE+ION'>CL</scene>, <scene name='pdbligand=PEG:DI(HYDROXYETHYL)ETHER'>PEG</scene>, <scene name='pdbligand=PO4:PHOSPHATE+ION'>PO4</scene></td></tr>
<tr id='gene'><td class="sblockLbl"><b>[[Gene|Gene:]]</b></td><td class="sblockDat">argF, VV1_1466 ([https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=216895 VIBVU])</td></tr>
<tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[https://en.wikipedia.org/wiki/Ornithine_carbamoyltransferase Ornithine carbamoyltransferase], with EC number [https://www.brenda-enzymes.info/php/result_flat.php4?ecno=2.1.3.3 2.1.3.3] </span></td></tr>
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=4jqo FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=4jqo OCA], [https://pdbe.org/4jqo PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=4jqo RCSB], [https://www.ebi.ac.uk/pdbsum/4jqo PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=4jqo ProSAT]</span></td></tr>
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=4jqo FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=4jqo OCA], [https://pdbe.org/4jqo PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=4jqo RCSB], [https://www.ebi.ac.uk/pdbsum/4jqo PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=4jqo ProSAT]</span></td></tr>
</table>
</table>
== Function ==
== Function ==
[[https://www.uniprot.org/uniprot/OTC_VIBVU OTC_VIBVU]] Reversibly catalyzes the transfer of the carbamoyl group from carbamoyl phosphate (CP) to the N(epsilon) atom of ornithine (ORN) to produce L-citrulline, which is a substrate for argininosuccinate synthetase, the enzyme involved in the final step in arginine biosynthesis (By similarity).  
[https://www.uniprot.org/uniprot/OTC_VIBVU OTC_VIBVU] Reversibly catalyzes the transfer of the carbamoyl group from carbamoyl phosphate (CP) to the N(epsilon) atom of ornithine (ORN) to produce L-citrulline, which is a substrate for argininosuccinate synthetase, the enzyme involved in the final step in arginine biosynthesis (By similarity).


==See Also==
==See Also==
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</StructureSection>
</StructureSection>
[[Category: Large Structures]]
[[Category: Large Structures]]
[[Category: Ornithine carbamoyltransferase]]
[[Category: Vibrio vulnificus CMCP6]]
[[Category: Vibvu]]
[[Category: Anderson WF]]
[[Category: Anderson, W F]]
[[Category: Domagalski MJ]]
[[Category: Structural genomic]]
[[Category: Grimshaw S]]
[[Category: Domagalski, M J]]
[[Category: Minor W]]
[[Category: Grimshaw, S]]
[[Category: Shabalin IG]]
[[Category: Minor, W]]
[[Category: Winsor J]]
[[Category: Shabalin, I G]]
[[Category: Winsor, J]]
[[Category: Carbamoyl phosphate]]
[[Category: Csgid]]
[[Category: L-ornithine]]
[[Category: National institute of allergy and infectious disease]]
[[Category: Niaid]]
[[Category: Transferase]]

Latest revision as of 15:47, 20 September 2023

Crystal structure of anabolic ornithine carbamoyltransferase from Vibrio vulnificus in complex with citrulline and inorganic phosphate

4jqo, resolution 2.08Å

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