BASIL2022GV3HDT: Difference between revisions
From Proteopedia
Jump to navigationJump to search
No edit summary |
No edit summary |
||
| Line 14: | Line 14: | ||
Beginning with BLASTp, we queried the FASTA sequence for our protein, PDB ID 3hdt. The alignment of our query sequence with the NK superfamily shows a high degree of overlap indicating this protein is likely a member. The importance of this is that the cytidylate kinase family is a member of the NK superfamily, supporting our claim that 3hdt is a cytidylate kinase. Also, the query hits show a couple cytidylate kinase-like family proteins almost completely allining with our protein 3HDT. | Beginning with BLASTp, we queried the FASTA sequence for our protein, PDB ID 3hdt. The alignment of our query sequence with the NK superfamily shows a high degree of overlap indicating this protein is likely a member. The importance of this is that the cytidylate kinase family is a member of the NK superfamily, supporting our claim that 3hdt is a cytidylate kinase. Also, the query hits show a couple cytidylate kinase-like family proteins almost completely allining with our protein 3HDT. | ||
[[Image:BLASTp image 1.png | | [[Image:BLASTp image 1.png |600px| left | thumb | BLASTp Alignment showing a hit with cytidylate kinase-like family, part of the NK superfamily.]] | ||
[[Image:BLASTp image 2.png |500px| center| thumb | Query hits 1-2 show proteins with unknown function while 3-6 match a cytidylate kinase-like family protein.]] | [[Image:BLASTp image 2.png |500px| center| thumb | Query hits 1-2 show proteins with unknown function while 3-6 match a cytidylate kinase-like family protein.]] | ||
