3r5l: Difference between revisions

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<StructureSection load='3r5l' size='340' side='right'caption='[[3r5l]], [[Resolution|resolution]] 1.55&Aring;' scene=''>
<StructureSection load='3r5l' size='340' side='right'caption='[[3r5l]], [[Resolution|resolution]] 1.55&Aring;' scene=''>
== Structural highlights ==
== Structural highlights ==
<table><tr><td colspan='2'>[[3r5l]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/"bacillus_tuberculosis"_(zopf_1883)_klein_1884 "bacillus tuberculosis" (zopf 1883) klein 1884]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3R5L OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=3R5L FirstGlance]. <br>
<table><tr><td colspan='2'>[[3r5l]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Mycobacterium_tuberculosis Mycobacterium tuberculosis]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3R5L OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=3R5L FirstGlance]. <br>
</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=MES:2-(N-MORPHOLINO)-ETHANESULFONIC+ACID'>MES</scene></td></tr>
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 1.55&#8491;</td></tr>
<tr id='NonStdRes'><td class="sblockLbl"><b>[[Non-Standard_Residue|NonStd Res:]]</b></td><td class="sblockDat"><scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene></td></tr>
<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=MES:2-(N-MORPHOLINO)-ETHANESULFONIC+ACID'>MES</scene>, <scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene></td></tr>
<tr id='related'><td class="sblockLbl"><b>[[Related_structure|Related:]]</b></td><td class="sblockDat"><div style='overflow: auto; max-height: 3em;'>[[3r5p|3r5p]], [[3r5r|3r5r]], [[3r5w|3r5w]], [[3r5y|3r5y]], [[3r5z|3r5z]]</div></td></tr>
<tr id='gene'><td class="sblockLbl"><b>[[Gene|Gene:]]</b></td><td class="sblockDat">ddn, MT3651, Rv3547 ([https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=1773 "Bacillus tuberculosis" (Zopf 1883) Klein 1884])</td></tr>
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=3r5l FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3r5l OCA], [https://pdbe.org/3r5l PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=3r5l RCSB], [https://www.ebi.ac.uk/pdbsum/3r5l PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=3r5l ProSAT]</span></td></tr>
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=3r5l FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3r5l OCA], [https://pdbe.org/3r5l PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=3r5l RCSB], [https://www.ebi.ac.uk/pdbsum/3r5l PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=3r5l ProSAT]</span></td></tr>
</table>
</table>
== Function ==
== Function ==
[[https://www.uniprot.org/uniprot/DDN_MYCTU DDN_MYCTU]] Nitroreductase involved in the bioreductive activation of the antitubercular prodrug PA-824 (nitroimidazo-oxazine) developed for anti-tuberculosis therapy against both replicating and persistent bacteria. It converts PA-824 into three primary metabolites; the major one is the des-nitroimidazole (des-nitro) which generated reactive nitrogen species, including nitric oxide (NO). Reactive nitrogen species play a major role in mammalian defense against mycobacterial infections.<ref>PMID:16387854</ref> <ref>PMID:19039139</ref>
[https://www.uniprot.org/uniprot/DDN_MYCTU DDN_MYCTU] Nitroreductase involved in the bioreductive activation of the antitubercular prodrug PA-824 (nitroimidazo-oxazine) developed for anti-tuberculosis therapy against both replicating and persistent bacteria. It converts PA-824 into three primary metabolites; the major one is the des-nitroimidazole (des-nitro) which generated reactive nitrogen species, including nitric oxide (NO). Reactive nitrogen species play a major role in mammalian defense against mycobacterial infections.<ref>PMID:16387854</ref> <ref>PMID:19039139</ref>  
<div style="background-color:#fffaf0;">
<div style="background-color:#fffaf0;">
== Publication Abstract from PubMed ==
== Publication Abstract from PubMed ==
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==See Also==
==See Also==
*[[Nitroreductase|Nitroreductase]]
*[[Nitroreductase 3D structures|Nitroreductase 3D structures]]
== References ==
== References ==
<references/>
<references/>
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</StructureSection>
</StructureSection>
[[Category: Large Structures]]
[[Category: Large Structures]]
[[Category: Barry, C E]]
[[Category: Mycobacterium tuberculosis]]
[[Category: Boshoff, H I.M]]
[[Category: Barry CE]]
[[Category: Bursulaya, B]]
[[Category: Boshoff HIM]]
[[Category: Cellitti, S E]]
[[Category: Bursulaya B]]
[[Category: Cherian, J]]
[[Category: Cellitti SE]]
[[Category: Choi, I]]
[[Category: Cherian J]]
[[Category: Dick, T]]
[[Category: Choi I]]
[[Category: Geierstanger, B H]]
[[Category: Dick T]]
[[Category: Gurumurthy, M]]
[[Category: Geierstanger BH]]
[[Category: Jones, D H]]
[[Category: Gurumurthy M]]
[[Category: Lee, Y S]]
[[Category: Jones DH]]
[[Category: Manjunatha, U H]]
[[Category: Lee YS]]
[[Category: Mukherjee, T]]
[[Category: Manjunatha UH]]
[[Category: Nayyar, A]]
[[Category: Mukherjee T]]
[[Category: Niyomrattanakit, P]]
[[Category: Nayyar A]]
[[Category: Shaffer, J]]
[[Category: Niyomrattanakit P]]
[[Category: Spraggon, G]]
[[Category: Shaffer J]]
[[Category: Deazaflavin-dependent nitroreductase]]
[[Category: Spraggon G]]
[[Category: Duf385]]
[[Category: Nitroimidazole]]
[[Category: Oxidoreductase]]
[[Category: Pa-824]]
[[Category: Split barrel-like fold]]
Retrieved from "https://proteopedia.org/3r5l"