4awd: Difference between revisions

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<StructureSection load='4awd' size='340' side='right'caption='[[4awd]], [[Resolution|resolution]] 2.40&Aring;' scene=''>
<StructureSection load='4awd' size='340' side='right'caption='[[4awd]], [[Resolution|resolution]] 2.40&Aring;' scene=''>
== Structural highlights ==
== Structural highlights ==
<table><tr><td colspan='2'>[[4awd]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/Bacteroides_plebeius Bacteroides plebeius]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=4AWD OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=4AWD FirstGlance]. <br>
<table><tr><td colspan='2'>[[4awd]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/Phocaeicola_plebeius Phocaeicola plebeius]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=4AWD OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=4AWD FirstGlance]. <br>
</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=CA:CALCIUM+ION'>CA</scene>, <scene name='pdbligand=GOL:GLYCEROL'>GOL</scene></td></tr>
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 2.4&#8491;</td></tr>
<tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[https://en.wikipedia.org/wiki/Beta-porphyranase Beta-porphyranase], with EC number [https://www.brenda-enzymes.info/php/result_flat.php4?ecno=3.2.1.178 3.2.1.178] </span></td></tr>
<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=CA:CALCIUM+ION'>CA</scene>, <scene name='pdbligand=GOL:GLYCEROL'>GOL</scene></td></tr>
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=4awd FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=4awd OCA], [https://pdbe.org/4awd PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=4awd RCSB], [https://www.ebi.ac.uk/pdbsum/4awd PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=4awd ProSAT]</span></td></tr>
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=4awd FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=4awd OCA], [https://pdbe.org/4awd PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=4awd RCSB], [https://www.ebi.ac.uk/pdbsum/4awd PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=4awd ProSAT]</span></td></tr>
</table>
</table>
== Function ==
== Function ==
[[https://www.uniprot.org/uniprot/PORB_BACPM PORB_BACPM]] Cleaves the sulfated polysaccharide porphyran at the (1->4) linkages between beta-D-galactopyranose and alpha-L-galactopyranose-6-sulfate, forming mostly the disaccharide alpha-L-galactopyranose-6-sulfate-(1->3)-beta-D-galactose. Some longer oligosaccharides of even number of residues are also observed. Inactive on the non-sulfated agarose portion of the porphyran backbone.<ref>PMID:23150581</ref>
[https://www.uniprot.org/uniprot/PORB_PHOPM PORB_PHOPM] Cleaves the sulfated polysaccharide porphyran at the (1->4) linkages between beta-D-galactopyranose and alpha-L-galactopyranose-6-sulfate, forming mostly the disaccharide alpha-L-galactopyranose-6-sulfate-(1->3)-beta-D-galactose. Some longer oligosaccharides of even number of residues are also observed. Inactive on the non-sulfated agarose portion of the porphyran backbone.<ref>PMID:23150581</ref>  
<div style="background-color:#fffaf0;">
<div style="background-color:#fffaf0;">
== Publication Abstract from PubMed ==
== Publication Abstract from PubMed ==
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__TOC__
__TOC__
</StructureSection>
</StructureSection>
[[Category: Bacteroides plebeius]]
[[Category: Beta-porphyranase]]
[[Category: Large Structures]]
[[Category: Large Structures]]
[[Category: Boraston, A B]]
[[Category: Phocaeicola plebeius]]
[[Category: Hehemann, J H]]
[[Category: Boraston AB]]
[[Category: Kelly, A G]]
[[Category: Hehemann JH]]
[[Category: Martens, E C]]
[[Category: Kelly AG]]
[[Category: Pudlo, N A]]
[[Category: Martens EC]]
[[Category: Hydrolase]]
[[Category: Pudlo NA]]
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