4al3: Difference between revisions

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<StructureSection load='4al3' size='340' side='right'caption='[[4al3]], [[Resolution|resolution]] 1.98&Aring;' scene=''>
<StructureSection load='4al3' size='340' side='right'caption='[[4al3]], [[Resolution|resolution]] 1.98&Aring;' scene=''>
== Structural highlights ==
== Structural highlights ==
<table><tr><td colspan='2'>[[4al3]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Ecobd Ecobd]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=4AL3 OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=4AL3 FirstGlance]. <br>
<table><tr><td colspan='2'>[[4al3]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Escherichia_coli_BL21(DE3) Escherichia coli BL21(DE3)]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=4AL3 OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=4AL3 FirstGlance]. <br>
</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=BME:BETA-MERCAPTOETHANOL'>BME</scene>, <scene name='pdbligand=CL:CHLORIDE+ION'>CL</scene>, <scene name='pdbligand=CO:COBALT+(II)+ION'>CO</scene></td></tr>
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 1.98&#8491;</td></tr>
<tr id='NonStdRes'><td class="sblockLbl"><b>[[Non-Standard_Residue|NonStd Res:]]</b></td><td class="sblockDat"><scene name='pdbligand=CSO:S-HYDROXYCYSTEINE'>CSO</scene></td></tr>
<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=BME:BETA-MERCAPTOETHANOL'>BME</scene>, <scene name='pdbligand=CL:CHLORIDE+ION'>CL</scene>, <scene name='pdbligand=CO:COBALT+(II)+ION'>CO</scene>, <scene name='pdbligand=CSO:S-HYDROXYCYSTEINE'>CSO</scene></td></tr>
<tr id='related'><td class="sblockLbl"><b>[[Related_structure|Related:]]</b></td><td class="sblockDat"><div style='overflow: auto; max-height: 3em;'>[[1bs4|1bs4]], [[1bs5|1bs5]], [[1bs6|1bs6]], [[1bs7|1bs7]], [[1bs8|1bs8]], [[1bsj|1bsj]], [[1bsk|1bsk]], [[1bsz|1bsz]], [[1def|1def]], [[1dff|1dff]], [[1dtf|1dtf]], [[1g27|1g27]], [[1g2a|1g2a]], [[1icj|1icj]], [[1lru|1lru]], [[1xem|1xem]], [[1xen|1xen]], [[1xeo|1xeo]], [[2ai8|2ai8]], [[2def|2def]], [[2dtf|2dtf]], [[2vhm|2vhm]], [[2w3t|2w3t]], [[2w3u|2w3u]], [[4al2|4al2]]</div></td></tr>
<tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[https://en.wikipedia.org/wiki/Peptide_deformylase Peptide deformylase], with EC number [https://www.brenda-enzymes.info/php/result_flat.php4?ecno=3.5.1.88 3.5.1.88] </span></td></tr>
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=4al3 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=4al3 OCA], [https://pdbe.org/4al3 PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=4al3 RCSB], [https://www.ebi.ac.uk/pdbsum/4al3 PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=4al3 ProSAT]</span></td></tr>
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=4al3 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=4al3 OCA], [https://pdbe.org/4al3 PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=4al3 RCSB], [https://www.ebi.ac.uk/pdbsum/4al3 PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=4al3 ProSAT]</span></td></tr>
</table>
</table>
== Function ==
== Function ==
[[https://www.uniprot.org/uniprot/DEF_ECOLI DEF_ECOLI]] Removes the formyl group from the N-terminal Met of newly synthesized proteins. Requires at least a dipeptide for an efficient rate of reaction. N-terminal L-methionine is a prerequisite for activity but the enzyme has broad specificity at other positions.[HAMAP-Rule:MF_00163]  
[https://www.uniprot.org/uniprot/DEF_ECOLI DEF_ECOLI] Removes the formyl group from the N-terminal Met of newly synthesized proteins. Requires at least a dipeptide for an efficient rate of reaction. N-terminal L-methionine is a prerequisite for activity but the enzyme has broad specificity at other positions.[HAMAP-Rule:MF_00163]
<div style="background-color:#fffaf0;">
<div style="background-color:#fffaf0;">
== Publication Abstract from PubMed ==
== Publication Abstract from PubMed ==
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__TOC__
__TOC__
</StructureSection>
</StructureSection>
[[Category: Ecobd]]
[[Category: Large Structures]]
[[Category: Large Structures]]
[[Category: Peptide deformylase]]
[[Category: Hinrichs W]]
[[Category: Hinrichs, W]]
[[Category: Palm GJ]]
[[Category: Palm, G J]]
[[Category: Hydrolase]]
[[Category: Oxidation-reduction]]

Latest revision as of 11:29, 20 December 2023

peptide deformylase (Co-form) with mercaptoethanol

4al3, resolution 1.98Å

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