Sandbox Reserved 1769: Difference between revisions

From Proteopedia
Jump to navigationJump to search
No edit summary
No edit summary
Line 12: Line 12:
=== Domains ===
=== Domains ===
NTCP contains <scene name='95/952697/Ntcp_open-pore_state/21'>two characteristic domains</scene>: the core and panel domains (Figure 3). Movement of these two domains allows recognition and transport of bile acids into hepatocytes.  
NTCP contains <scene name='95/952697/Ntcp_open-pore_state/21'>two characteristic domains</scene>: the core and panel domains (Figure 3). Movement of these two domains allows recognition and transport of bile acids into hepatocytes.  
*<b><font color="orange">Panel Domain</font></b>: <scene name='95/952697/Ntcp_open-pore_state/18'>Residues 1-44, 155-208</scene>
*<b><font color="orange">Panel Domain</font></b>: <scene name='95/952697/Ntcp_open-pore_state/23'>Residues 1-44, 155-208</scene>
** Formed by transmembrane helices TM1, TM5, and TM6.
** Formed by transmembrane helices TM1, TM5, and TM6.
*<b><font color="#0040e0">Core domain</font></b>: <scene name='95/952697/Ntcp_open-pore_state/19'>Residues 45-154, 209-309</scene>
*<b><font color="#0040e0">Core domain</font></b>: <scene name='95/952697/Ntcp_open-pore_state/24'>Residues 45-154, 209-309</scene>
**Formed by the packing of a helix bundle of <b><font color="blue">TM2, TM3, and TM4</font></b> with another helix bundle of <b><font color="skyblue">TM7, TM8, and TM9</font></b>. These two helix bundles are related by pseudo two-fold symmetry.<Ref name="Qi"> Qi X, Li W. Unlocking the secrets to human NTCP structure. Innovation (Camb). 2022 Aug 1;3(5):100294. [https://dx.doi.org/10.1016/j.xinn.2022.100294 DOI: 10.1016/j.xinn.2022.100294]. </Ref>
**Formed by the packing of a helix bundle of <b><font color="blue">TM2, TM3, and TM4</font></b> with another helix bundle of <b><font color="skyblue">TM7, TM8, and TM9</font></b>. These two helix bundles are related by pseudo two-fold symmetry.<Ref name="Qi"> Qi X, Li W. Unlocking the secrets to human NTCP structure. Innovation (Camb). 2022 Aug 1;3(5):100294. [https://dx.doi.org/10.1016/j.xinn.2022.100294 DOI: 10.1016/j.xinn.2022.100294]. </Ref>


=== Proline/Glycine Hinge ===
=== Proline/Glycine Hinge ===
<scene name='95/952697/Ntcp_open-pore_state/20'>Glycine and proline residues</scene> in the connecting loops and extra- and intracellular helices (Figure 3) act as hinges in the mechanism of bile salt uptake. This flexibility allows separation of the core and panel domains, creating a pore open to the extracellular space and exposing critical Na+ binding sites. Once substrate binds the open-pore state, this hinge allows the transition to close this pore relative to the extracellular side and open to the cytoplasmic side, thus allowing release of substrate into the cell.<ref name = "Goutam" />
<scene name='95/952697/Ntcp_open-pore_state/25'>Glycine and proline residues</scene> in the connecting loops and extra- and intracellular helices (Figure 3) act as hinges in the mechanism of bile salt uptake. This flexibility allows separation of the core and panel domains, creating a pore open to the extracellular space and exposing critical Na+ binding sites. Once substrate binds the open-pore state, this hinge allows the transition to close this pore relative to the extracellular side and open to the cytoplasmic side, thus allowing release of substrate into the cell.<ref name = "Goutam" />


=== Sodium Binding Sites ===
=== Sodium Binding Sites ===

Revision as of 17:12, 3 April 2023

Sodium-taurocholate Co-transporting Polypeptide

Sodium-taurocholate co-transporting Polypeptide (NTCP). The top is extracellular in relation to the hepatocyte, and the bottom is intracellular. Purple spheres represent Na+ ions and grey surfaces represent substrate. (PDB: 7ZYI)

Drag the structure with the mouse to rotate

References


Student Contributors

  • Ben Minor
  • Maggie Samm
  • Zac Stanley