8iwl: Difference between revisions

From Proteopedia
Jump to navigationJump to search
← Older editNewer edit →
OCA (talk | contribs)
Bots, Bureaucrats, journal, Administrators
3,332,843 edits
m Protected "8iwl" [edit=sysop:move=sysop]
OCA (talk | contribs)
Bots, Bureaucrats, journal, Administrators
3,332,843 edits
No edit summary
Line 1: Line 1:
'''Unreleased structure'''


The entry 8iwl is ON HOLD
==A.baumannii Uncharacterized sugar kinase ydjH==
<StructureSection load='8iwl' size='340' side='right'caption='[[8iwl]], [[Resolution|resolution]] 3.04&Aring;' scene=''>
== Structural highlights ==
<table><tr><td colspan='2'>[[8iwl]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/Acinetobacter_baumannii Acinetobacter baumannii]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=8IWL OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=8IWL FirstGlance]. <br>
</td></tr><tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=8iwl FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=8iwl OCA], [https://pdbe.org/8iwl PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=8iwl RCSB], [https://www.ebi.ac.uk/pdbsum/8iwl PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=8iwl ProSAT]</span></td></tr>
</table>
<div style="background-color:#fffaf0;">
== Publication Abstract from PubMed ==
Bacterial sugar kinase is a central enzyme for proper sugar degradation in bacteria, essential for survival and growth. Therefore, this enzyme family is a primary target for antibacterial drug development, with YdjH most preferring to phosphorylate higher-order monosaccharides with a carboxylate terminus. Sugar kinases express diverse specificity and functions, making specificity determination of this family a prominent issue. This study examines the YdjH crystal structure from Acinetobacter baumannii (abYdjH), which has an exceptionally high antibiotic resistance and is considered a superbug. Our structural and biochemical study revealed that abYdjH has a widely open lid domain and is a solution dimer. In addition, the putative active site of abYdjH was determined based on structural analysis, sequence comparison, and in silico docking. Finally, we proposed the active site-forming residues that determine various sugar specificities from abYdjH. This study contributes towards a deeper understanding of the phosphorylation process and bacterial sugar metabolism of YdjH family to design the next-generation antibiotics for targeting A. baumannii.


Authors: Lee, G.H., Park, H.H.
Structure of YdjH from Acinetobacter baumannii revealed an active site of YdjH family sugar kinase.,Lee GH, Kim JH, Ha HJ, Park HH Biochem Biophys Res Commun. 2023 Apr 22;664:27-34. doi: , 10.1016/j.bbrc.2023.04.073. PMID:37130458<ref>PMID:37130458</ref>


Description: A.baumannii Uncharacterized sugar kinase ydjH
From MEDLINE&reg;/PubMed&reg;, a database of the U.S. National Library of Medicine.<br>
[[Category: Unreleased Structures]]
</div>
[[Category: Park, H.H]]
<div class="pdbe-citations 8iwl" style="background-color:#fffaf0;"></div>
[[Category: Lee, G.H]]
== References ==
<references/>
__TOC__
</StructureSection>
[[Category: Acinetobacter baumannii]]
[[Category: Large Structures]]
[[Category: Lee GH]]
[[Category: Park HH]]
Retrieved from "https://proteopedia.org/8iwl"