Sandbox Reserved 1771

This Sandbox is Reserved from February 27 through August 31, 2023 for use in the course CH462 Biochemistry II taught by R. Jeremy Johnson at the Butler University, Indianapolis, USA. This reservation includes Sandbox Reserved 1765 through Sandbox Reserved 1795.

To get started: Click the edit this page tab at the top. Save the page after each step, then edit it again. show the Scene authoring tools, create a molecular scene, and save it. Copy the green link into the page. Add a description of your scene. Use the buttons above the wikitext box for bold, italics, links, headlines, etc. More help: Help:Editing

IgM B-cell Receptor

spinqualitylabelsall models Human mIgM B Cell Receptor. Heavy chain 1 is represented in blue, heavy chain 2 in magenta, light chain 1 in green, and light chain 2 in yellow. Iga is shown in red while Igb is in orange. 7XQ8 Show:Asymmetric Unit Biological Assembly Drag the structure with the mouse to rotate   Export Animated Image   Print3D Introduction B-cells play an important role in the human immune system by creating specific antibodies against foreign pathogens. On the surface of B-cells, membrane bound B-cell receptors(BCRs) play a role in recognizing antigens. . Several different types of BCRs( IgG, IgA, IgM, IgE, or IgD) perform distinct functions for different diseases by activating different pathways depending on the antigen. BCRs consist of three domains: extracellular, transmembrane, and intracellular. The extracellular region makes up most of the protein, which is where antigen binding occurs. The role of BCRs is to bind to foreign antigens and initiate the appropriate immune response. Once bound to an antigen, the BCR undergoes a conformational change in the extracellular region. This initiates several signal transduction pathways, which are responsible for processing the antigen and initiating the appropriate immune responses. To initiate the intracellular signalling cascade, the α-β subunit activates a tyrosine kinase motif upon binding of an antigen. The tyrosine kinase motif triggers the activation of kinases downstream that aid in the immune response. The focus of this page will be the IgM BCR and its unique interactions. Unlike other BCRs, the IgM BCR has a specific heavy chain interaction with the α-β subunit (part of the transmembrane region) of the protein. This page will also cover the structure, function, intermolecular interactions, formation of B-cells, diseases relating to B-cells and BCRs, and therapeutics in more detail. Structure B cell receptors have distinct functional domains that each play a unique role in response to a foreign antigen. These include the extracellular domain, the transmembrane domain, and the intracellular domain (the structure of this domain is still unclear). To accomplish B cell signaling, the BCR must bind an antigen and transmit the signal through the receptor domains. Exploring the different sections of a BCR, the antigen binding site (located in the extracellular region) is specific to antigens, but the process is highly conserved across different BCRs. More specifically, the IgM BCR has a unique interaction concerning its Fc chains and a/b subunits. These interactions contribute to the overall structure of the protein. This section will explore these structural regions starting with the extracellular domain, describing the antigen binding domain, outlining unique interactions between Fc chains and a/b subunits, and describing the intermolecular interactions that keep subunits together. Ultimately, the interactions of the transmembrane domain that anchor the complex to the membrane are examined. Antigen Binding Site Figure 1. Diagram of the human B Cell Receptor with the Fab fragments, binding region, variable regions, constant regions and Iga/ Igb labelled. Heavy chain 1 is represented in blue, heavy chain 2 in magenta, light chain 1 in green, and light chain 2 in yellow. Disulfide bridges are represented with solid black lines connecting the heavy chains to themselves and to the light chains. The binding of an antigen to the human B Cell receptor is identical to other common soluble antibodies (such as IgG, IgA, IgM, IgE, or IgD). The antibody portion of the B Cell Receptor is roughly "Y" shaped and consists of two identical heavy and two identical light chains creating two similar epitope binding regions (figure 1). Two antigen molecules can bind independent of one another to produce a response. Matching with standard FABs, the Ig portion has constant and variable region. The stem of the "Y" is a constant region (constant region zoomed, Fc) composed of only heavy chain interactions. The two heavy chains then branch at a flexible hinge region (hinge region zoomed). These interact individually with one light chain creating two Fab fragments or branches of the "Y". Light and heavy chains are held together via weak intermolecular forces and disulfide bridges. Each fab fragment (fab fragment zoomed) then terminates with two variable regions (variable region zoomed), (Fv). These variable regions consist of hyper-variable loops, desired random coils of amino acids selected for specific recognition of a desired antigen . Binding to an antigen is determined based on intermolecular interactions to the hyper variable loops, and selectivity is provided by unique hyper variable loop sequences. Due to the identical structure of Fab fragments, BCR will recognize antigens in the same manner as do free antibodies. This is emphasized by Ma et al. who studied the IgG- BCR (VRC01) that targets gp120 of the HIV-1 virus. By comparing structures of membrane bound and free antibodies, the membrane bound BCR form has an identical structure to the free antibody suggesting that they recognize antigens in the same way. This leads to a conformational change in the protein and transmits the signal through the membrane. Fc and α/β Interactions While the antigen binding site structure of the mIgM BCR is identical to common soluble antibodies, intermolecular interactions between the heavy chains and Igα/β subunits provide the emergent receptor properties. In the Fc portion of the structure, the two heavy chains interact via a disulfide bond and form an O-shaped ring. Additionally, the Fc portion binds the Ig α/β heterodimer (heterodimer zoomed) with 1:1 stoichiometry. . Due to the orientation of the heavy chains in the O-shaped ring, only Heavy chain 1 (Hc1) forms direct interactions with the Igα/β heterodimer. To correspond with the 3D representations, Hc1 residues will be represented in blue, Igα residues will be represented in red, and Igβ residues will be represented in orange. Furthermore, Hc1 and Igα interact through two hydrogen bonds (T75-Q487 and N73-Q493) which are stabilized by sandwiching of aromatic residues (W76 sandwiched between F358 and F485). Similarly, Hc1 and Igβ interact through three hydrogen bonds (Y66-R491, K62-T530, and R55-T533). The residues involved in the interactions at the heavy chain and Igα/β interface are highly conserved across all species, suggesting a conserved mode of interaction. . The Igα/β heterodimer is composed of a transmembrane domain, which consists of two hydrophobic helices, and an extracellular domain, which forms an interface with and Hc1. The Igα/β heterodimer is an obligate component of all BCRs. Igα and Igβ non-covalently associate with mIgM, and are crucial components for initiating biochemical signaling inside the B cell upon antigen binding. . Igα and Igβ are connected by a disulfide bond between cystine residues (C119-C136). The disulfide bond is further stabilized by π-π stacking (Y122 and F52) and a hydrogen bond (G120-R51). These residues in Igα/β are highly conserved across species, suggesting conservation of the Igα/β interface. . Transmembrane Interactions Many transmembrane interactions can be found within a IgM BCR. The α and β subunits have numerous interactions that keep them associated with each other. Residue interactions found within the α-β subunits, such as hydrogen bonds and ionic interactions can be found here (highlighted in green). At cellular pH, charged residues found in the transmembrane region strengthen the overall interaction through hydrogen bonds and ionic interactions. For example, a hydrogen bond between residues N155 and E138, along with numerous other hydrogen bonds, works to stabilize the α-β chain interactions in the transmembrane region. Further down the chains, hydrogen bonding between residues T166 and E148 work to keep the α-β subunit associated with each other. Overall, these hydrogen bonds and ion interactions work to maintain the association of the α-β chains, which allows the BCR to activate an immune response. Structure Summary The BCR complex is anchored to the membrane through its transmembrane region and interactions between heavy chains and Ig/ Igb. Upon antigen binding, the BCR will undergo a unique structural conformation change that will allow transmission of the signal through the extracellular regions and the cell membrane to elicit an intracellular response. Interaction with a foreign antigen occurs at hyper-variable loop regions and causes the separation of Fab fragments . This structural, conformational change will be transmitted through the heavy chains to the interface of heavy chain 1 and the Iga/ Igb complex. The signal will then be carried through the Iga/ Igb complex past the membrane and into the cell from a shifting of interactions and overall conformational change due to binding . This will trigger intracellular signaling that will elicit subsequent production of free antibodies to recognize and target the foreign antigen. Any malfunction of one of these regions will lead to improper functioning of the BCR and lessen the immune response as a whole. Medical Relevancy B-cell Formation The formation of B-cells occurs in the bone marrow from hematopoietic stem cells. Once formed, B-cell receptors are attached to B-cells through the aid of membrane-bound proteins in bone marrow cells. During this process, gene recombination occurs, which allows unique BCRs to become highly specific to different antigens. Once they are formed, B-cells diverge and become either memory cells or plasma cells. Memory cells still have BCRs and initiate a faster immune response, while plasma cells secrete antibodies in response to foreign antigens. Disease B-cells and their respective receptors play an important role in the immune response. Misregulation can lead to damaging consequences. Autoimmune diseases develop when somatic cells are recognized as foreign antigens and the body tries to eliminate them . B-cell receptors are hypothesized to be an essential part of autoimmune disease development due to BCR function and role in the immune systems. In autoimmune diseases, BCRs improperly recognize somatic cells from different tissues and elicit the production of autoantibodies, causing the destruction of these cell types. Examples of these diseases include rheumatoid arthritis where the lining of joints is targeted and degraded, multiple sclerosis which targets the myelin sheath that surrounds nerve cells, type 1 diabetes mellitus where the insulin producing cells are targeted for destruction, and systematic lupus erythematosus where multiple organ systems are targeted (skin, brain, lungs, and kidneys are common targets) . Therapeutics Current approaches to treatments of these autoimmune diseases include replacement and immunosuppressive therapies . Replacement therapy consists of the supplementation of important biological hormones (such as estrogen in Rheumatoid arthritis ) or molecules (such as Vitamin D ) that are reduced from disease. Immunosuppressive therapies instead treat disease symptoms to prevent further organ damage . Immunosuppressive therapies include drugs that suppress the immune system response as well as anti-inflammatory drugs. Gene therapy has also been studied as another therapeutic avenue. In gene therapy, cells express specific genes for the regulation of proinflammatory molecules or reduction of immune cells to the site of disease . Currently, the majority of treatments for autoimmune diseases aim to improve the quality of life and reduce symptoms as there has not yet been an established cure. 3D structures of the BCR 3D structures of the BCR

Student Contributors

• Joel Wadas
• Olivia Gooch
• Delaney Lupoi