1kz6: Difference between revisions

From Proteopedia
Jump to navigationJump to search
← Older editNewer edit →
OCA (talk | contribs)
Bots, Bureaucrats, journal, Administrators
3,331,613 edits
No edit summary
OCA (talk | contribs)
Bots, Bureaucrats, journal, Administrators
3,331,613 edits
No edit summary
Line 1: Line 1:
[[Image:1kz6.jpg|left|200px]]
{{Seed}}
[[Image:1kz6.png|left|200px]]


<!--
<!--
Line 9: Line 10:
{{STRUCTURE_1kz6|  PDB=1kz6  |  SCENE=  }}  
{{STRUCTURE_1kz6|  PDB=1kz6  |  SCENE=  }}  


'''Mutant enzyme W63Y/L119F Lumazine Synthase from S.pombe'''
===Mutant enzyme W63Y/L119F Lumazine Synthase from S.pombe===




==Overview==
<!--  
Riboflavin is an essential cofactor in all organisms. Its direct biosynthetic precursor, 6,7-dimethyl-8-ribityllumazine, is synthesised by the enzyme 6,7-dimethyl-8-ribityllumazine synthase. Recently, we have found that the enzyme from Schizosaccharomyces pombe binds riboflavin, the final product of the pathway with a relatively high affinity with a KD of 1.2 microM. Here, we report on the crystal structure of lumazine synthase from S. pombe with bound riboflavin and compare the binding mode with those of the substrate analogue inhibitor 5-nitro-6-(D-ribitylamino)-2,4(1H,3H)-pyrimidinedione and of the product analogue 6-carboxyethyl-7-oxo-8-ribityllumazine. In all complexes the pyrimidinedione moieties of each respective ligand bind in a very similar orientation. Binding of riboflavin additionally involves a stacking interaction of the dimethylbenzene moiety with the side-chain of His94, a highly conserved residue in all lumazine synthases. The enzyme from Bacillus subtilis showed a KD of at least 1 mM whereas the very homologous enzyme from Saccharomyces cerevisiae had a comparable KD of 3.9 microM. Structural comparison of the S. cerevisiae, the S. pombe, and the mutant enzymes suggests that fine tuning of affinity is achieved by influencing this stacking interaction.
The line below this paragraph, {{ABSTRACT_PUBMED_12083520}}, adds the Publication Abstract to the page
(as it appears on PubMed at http://www.pubmed.gov), where 12083520 is the PubMed ID number.
-->
{{ABSTRACT_PUBMED_12083520}}


==About this Structure==
==About this Structure==
Line 36: Line 40:
[[Category: Riboflavin biosynthesis]]
[[Category: Riboflavin biosynthesis]]
[[Category: Schizosaccharomyces pombe]]
[[Category: Schizosaccharomyces pombe]]
''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Fri May 2 23:21:06 2008''
 
''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Wed Jul 2 11:20:24 2008''

Revision as of 08:20, 2 July 2008

File:1kz6.png

Template:STRUCTURE 1kz6

Mutant enzyme W63Y/L119F Lumazine Synthase from S.pombe

Template:ABSTRACT PUBMED 12083520

About this Structure

1KZ6 is a Single protein structure of sequence from Schizosaccharomyces pombe. Full crystallographic information is available from OCA.

Reference

The structural basis of riboflavin binding to Schizosaccharomyces pombe 6,7-dimethyl-8-ribityllumazine synthase., Gerhardt S, Haase I, Steinbacher S, Kaiser JT, Cushman M, Bacher A, Huber R, Fischer M, J Mol Biol. 2002 May 17;318(5):1317-29. PMID:12083520

Page seeded by OCA on Wed Jul 2 11:20:24 2008

Proteopedia Page Contributors and Editors (what is this?)

OCA

Retrieved from "https://proteopedia.org/index.php?title=1kz6&oldid=623168"