8c7p: Difference between revisions

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<StructureSection load='8c7p' size='340' side='right'caption='[[8c7p]], [[Resolution|resolution]] 3.00&Aring;' scene=''>
<StructureSection load='8c7p' size='340' side='right'caption='[[8c7p]], [[Resolution|resolution]] 3.00&Aring;' scene=''>
== Structural highlights ==
== Structural highlights ==
<table><tr><td colspan='2'>[[8c7p]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Thiobacillus_denitrificans_ATCC_25259 Thiobacillus denitrificans ATCC 25259]. This structure supersedes the now removed PDB entry [http://oca.weizmann.ac.il/oca-bin/send-pdb?obs=1&id=6ffv 6ffv]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=8C7P OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=8C7P FirstGlance]. <br>
<table><tr><td colspan='2'>[[8c7p]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Thiobacillus_denitrificans_ATCC_25259 Thiobacillus denitrificans ATCC 25259]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=8C7P OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=8C7P FirstGlance]. <br>
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 3&#8491;</td></tr>
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 3&#8491;</td></tr>
<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=B12:COBALAMIN'>B12</scene></td></tr>
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=8c7p FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=8c7p OCA], [https://pdbe.org/8c7p PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=8c7p RCSB], [https://www.ebi.ac.uk/pdbsum/8c7p PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=8c7p ProSAT]</span></td></tr>
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=8c7p FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=8c7p OCA], [https://pdbe.org/8c7p PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=8c7p RCSB], [https://www.ebi.ac.uk/pdbsum/8c7p PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=8c7p ProSAT]</span></td></tr>
</table>
</table>
== Function ==
== Function ==
[https://www.uniprot.org/uniprot/Q3SFD8_THIDA Q3SFD8_THIDA]  
[https://www.uniprot.org/uniprot/Q3SFD8_THIDA Q3SFD8_THIDA]  
<div style="background-color:#fffaf0;">
== Publication Abstract from PubMed ==
BtuM is a bacterial cobalamin transporter that binds the transported substrate in the base-off state, with a cysteine residue providing the alpha-axial coordination of the central cobalt ion via a sulfur-cobalt bond. Binding leads to decyanation of cobalamin variants with a cyano group as the beta-axial ligand. Here, we report the crystal structures of untagged BtuM bound to two variants of cobalamin, hydroxycobalamin and cyanocobalamin, and unveil the native residue responsible for the beta-axial coordination, His28. This coordination had previously been obscured by non-native histidines of His-tagged BtuM. A model in which BtuM initially binds cobinamide reversibly with low affinity (K(D) = 4.0 muM), followed by the formation of a covalent bond (rate constant of 0.163 s(-1)), fits the kinetics data of substrate binding and decyanation of the cobalamin precursor cobinamide by BtuM. The covalent binding mode suggests a mechanism not used by any other transport protein.
Cobalamin decyanation by the membrane transporter BtuM.,Martinez Felices JM, Barreto YB, Thangaratnarajah C, Whittaker JJ, Alencar AM, Guskov A, Slotboom DJ Structure. 2024 Aug 8;32(8):1165-1173.e3. doi: 10.1016/j.str.2024.04.014. Epub , 2024 May 10. PMID:38733996<ref>PMID:38733996</ref>
From MEDLINE&reg;/PubMed&reg;, a database of the U.S. National Library of Medicine.<br>
</div>
<div class="pdbe-citations 8c7p" style="background-color:#fffaf0;"></div>
== References ==
<references/>
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</StructureSection>
</StructureSection>

Latest revision as of 19:35, 8 September 2026

Tagless BtuM in complex with cyanocobalamin

8c7p, resolution 3.00Å

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