1pvq: Difference between revisions

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[[Image:1pvq.~~gif~~|left|200px]]

[[Image:1pvq.png|left|200px]]

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~~'''~~BASIS FOR A SWITCH IN SUBSTRATE SPECIFICITY: CRYSTAL STRUCTURE OF SELECTED VARIANT OF CRE SITE-SPECIFIC RECOMBINASE, LNSGG BOUND TO THE ENGINEERED RECOGNITION SITE LOXM7~~'''~~

===BASIS FOR A SWITCH IN SUBSTRATE SPECIFICITY: CRYSTAL STRUCTURE OF SELECTED VARIANT OF CRE SITE-SPECIFIC RECOMBINASE, LNSGG BOUND TO THE ENGINEERED RECOGNITION SITE LOXM7===

~~==Overview==~~

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The ~~basis for the altered DNA specificities of two Cre recombinase variants~~, ~~obtained by mutation and selection~~, ~~was revealed by their cocrystal structures. The proteins share similar substitutions but differ in their preferences for~~ the ~~natural LoxP substrate and an engineered substrate that is inactive with wild-type Cre, LoxM7. One variant preferentially recombines LoxM7 and contacts~~ the ~~substituted bases through a hydrated network of novel interlocking protein-DNA contacts~~. ~~The other variant recognizes both LoxP and LoxM7 utilizing the same DNA backbone contact but different base contacts, facilitated by an unexpected DNA shift~~. ~~Assisted by water~~, novel interaction networks can arise from few protein substitutions, suggesting how new DNA binding specificities might evolve. The contributions of macromolecular plasticity and water networks in specific DNA recognition observed here present a challenge for predictive schemes.

The line below this paragraph, {{ABSTRACT_PUBMED_14652076}}, adds the Publication Abstract to the page

(as it appears on PubMed at http://www.pubmed.gov), where 14652076 is the PubMed ID number.

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==About this Structure==

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[[Category: Dna]]

[[Category: Recombinase]]

''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on ~~Sat May 3 05~~:32:28 2008''

''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Mon Jul 28 04:18:10 2008''

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-[[Image:1pvq.gif|left|200px]]
+{{Seed}}
+[[Image:1pvq.png|left|200px]]
 <!--
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 {{STRUCTURE_1pvq|  PDB=1pvq  |  SCENE=  }}
-'''BASIS FOR A SWITCH IN SUBSTRATE SPECIFICITY: CRYSTAL STRUCTURE OF SELECTED VARIANT OF CRE SITE-SPECIFIC RECOMBINASE, LNSGG BOUND TO THE ENGINEERED RECOGNITION SITE LOXM7'''
+===BASIS FOR A SWITCH IN SUBSTRATE SPECIFICITY: CRYSTAL STRUCTURE OF SELECTED VARIANT OF CRE SITE-SPECIFIC RECOMBINASE, LNSGG BOUND TO THE ENGINEERED RECOGNITION SITE LOXM7===
-==Overview==
+<!--
-The basis for the altered DNA specificities of two Cre recombinase variants, obtained by mutation and selection, was revealed by their cocrystal structures. The proteins share similar substitutions but differ in their preferences for the natural LoxP substrate and an engineered substrate that is inactive with wild-type Cre, LoxM7. One variant preferentially recombines LoxM7 and contacts the substituted bases through a hydrated network of novel interlocking protein-DNA contacts. The other variant recognizes both LoxP and LoxM7 utilizing the same DNA backbone contact but different base contacts, facilitated by an unexpected DNA shift. Assisted by water, novel interaction networks can arise from few protein substitutions, suggesting how new DNA binding specificities might evolve. The contributions of macromolecular plasticity and water networks in specific DNA recognition observed here present a challenge for predictive schemes.
+The line below this paragraph, {{ABSTRACT_PUBMED_14652076}}, adds the Publication Abstract to the page
+(as it appears on PubMed at http://www.pubmed.gov), where 14652076 is the PubMed ID number.
+-->
+{{ABSTRACT_PUBMED_14652076}}
 ==About this Structure==
@@ Line 33: / Line 37: @@
 [[Category: Dna]]
 [[Category: Recombinase]]
-''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Sat May  3 05:32:28 2008''
+''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Mon Jul 28 04:18:10 2008''