Atomic coordinate file: Difference between revisions
From Proteopedia
Jump to navigationJump to search
Eric Martz (talk | contribs) |
Eric Martz (talk | contribs) |
||
| Line 32: | Line 32: | ||
In February, 2019, the [[wwPDB]] announced that new depositions must be in the mmCIF format beginning July 1, 2019<ref name="endOfPDBFormat">[https://lists.sdsc.edu/pipermail/pdb-l/2019-February/006209.html Mandatory PDBx/mmCIF format files submission for MX depositions]: posted on the PDB email list Feb 20, 2019 by Jasmine Young, Biocuration Team Lead, RCSB PDB. The wwPDb website also posted [http://www.wwpdb.org/news/news?year=2019#5c6ad3c5ea7d0653b99c8766 this document].</ref>. The PDB sometimes refers to the mmCIF format as "PDBx", which should not be confused with the original legacy PDB format. | In February, 2019, the [[wwPDB]] announced that new depositions must be in the mmCIF format beginning July 1, 2019<ref name="endOfPDBFormat">[https://lists.sdsc.edu/pipermail/pdb-l/2019-February/006209.html Mandatory PDBx/mmCIF format files submission for MX depositions]: posted on the PDB email list Feb 20, 2019 by Jasmine Young, Biocuration Team Lead, RCSB PDB. The wwPDb website also posted [http://www.wwpdb.org/news/news?year=2019#5c6ad3c5ea7d0653b99c8766 this document].</ref>. The PDB sometimes refers to the mmCIF format as "PDBx", which should not be confused with the original legacy PDB format. | ||
In December, 2023, the [[wwPDB]] announced that all 3-character ligand ID codes had been exhausted <ref name="nomore3s">[https://www.wwpdb.org/news/news?year=2023#656f4404d78e004e766a96c6 PDB Entries with Novel Ligands Now Distributed Only in PDBx/mmCIF and PDBML File Formats], wwPDB News, December 12, 2023.</ref>. Thereafter, new entries with novel ligands will be available only in | In December, 2023, the [[wwPDB]] announced that all 3-character ligand ID codes had been exhausted <ref name="nomore3s">[https://www.wwpdb.org/news/news?year=2023#656f4404d78e004e766a96c6 PDB Entries with Novel Ligands Now Distributed Only in PDBx/mmCIF and PDBML File Formats], wwPDB News, December 12, 2023.</ref>. Thereafter, new entries with novel ligands will be available only in mmCIF format. | ||
===mmCIF Data Format=== | ===mmCIF Data Format=== | ||
