8jc1: Difference between revisions
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==Crystal structure of Pectocin M1 from Pectobacterium carotovorum== | |||
<StructureSection load='8jc1' size='340' side='right'caption='[[8jc1]], [[Resolution|resolution]] 2.04Å' scene=''> | |||
== Structural highlights == | |||
<table><tr><td colspan='2'>[[8jc1]] is a 4 chain structure with sequence from [https://en.wikipedia.org/wiki/Pectobacterium_carotovorum Pectobacterium carotovorum]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=8JC1 OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=8JC1 FirstGlance]. <br> | |||
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 2.04Å</td></tr> | |||
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=8jc1 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=8jc1 OCA], [https://pdbe.org/8jc1 PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=8jc1 RCSB], [https://www.ebi.ac.uk/pdbsum/8jc1 PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=8jc1 ProSAT]</span></td></tr> | |||
</table> | |||
== Function == | |||
[https://www.uniprot.org/uniprot/C6DJ69_PECCP C6DJ69_PECCP] | |||
<div style="background-color:#fffaf0;"> | |||
== Publication Abstract from PubMed == | |||
Pectocin M1 (PM1), the bacteriocin from phytopathogenic Pectobacterium carotovorum which causes soft rot disease, has a unique ferredoxin domain that allows it to use FusA of the plant ferredoxin uptake system. To probe the structure-based mechanism of PM1 uptake, we determined the X-ray structure of full-length PM1, containing an N-terminal ferredoxin and C-terminal catalytic domain connected by helical linker, at 2.04 A resolution. Based on published FusA structure and NMR data for PM1 ferredoxin domain titrated with FusA, we modeled docking of the ferredoxin domain with FusA. Combining the docking models with the X-ray structures of PM1 and FusA enables us to propose the mechanism by which PM1 undergoes dynamic domain rearrangement to translocate across the target cell outer membrane. | |||
Crystal structure of pectocin M1 reveals diverse conformations and interactions during its initial step via the ferredoxin uptake system.,Jantarit N, Tanaka H, Lin Y, Lee YH, Kurisu G FEBS Open Bio. 2024 Aug 9. doi: 10.1002/2211-5463.13874. PMID:39123319<ref>PMID:39123319</ref> | |||
From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.<br> | |||
[[Category: | </div> | ||
[[Category: Jantarit | <div class="pdbe-citations 8jc1" style="background-color:#fffaf0;"></div> | ||
[[Category: | == References == | ||
[[Category: | <references/> | ||
__TOC__ | |||
</StructureSection> | |||
[[Category: Large Structures]] | |||
[[Category: Pectobacterium carotovorum]] | |||
[[Category: Jantarit N]] | |||
[[Category: Kurisu G]] | |||
[[Category: Tanaka H]] | |||
Latest revision as of 05:32, 4 September 2024
Crystal structure of Pectocin M1 from Pectobacterium carotovorum
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