ConSurfDB vs. ConSurf: Difference between revisions

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==Examples==

With default parameters, the ConSurf Server results have an average [[#Average Pairwise Distance]] (APD) of 1.00<ref name="APD">Tested with 20 arbitrarily selected proteins, mostly enzymes. Average of the average pairwise distance (APD) values: 1.00; range 0.82-1.42.</ref>, and an average of only a few "yellow" residues with insufficient data.<ref name="ISD">Tested with 20 arbitrarily selected proteins, mostly enzymes. Average number of amino acids with insufficient data ("yellow" in ConSurf): 3.5; range 0 to 16.</ref> For the examples below, it was necessary to customize the ConSurf Server job parameters in order to reveal conservation present in proteins with the same function as the query.

With default parameters, the ConSurf Server results have an average [[#Average Pairwise Distance]] (APD) of 1.00<ref name="APD">Tested with 20 arbitrarily selected proteins, mostly enzymes. Average of the average pairwise distance (APD) values: 1.00; range 0.82-1.42.</ref>, and an average of only a few "yellow" residues with insufficient data.<ref name="ISD">Tested with 20 arbitrarily selected proteins, mostly enzymes. Average number of amino acids with insufficient data ("yellow" in ConSurf): 3.5; range 0 to 16.</ref> For the examples below, it was necessary to [[#Limiting ConSurf Analysis to Proteins of a Single Function|customize the ConSurf Server job parameters]] in order to reveal conservation present in proteins with the same function as the query.

===Case #1: MHC===

ConSurfDB vs. ConSurf: Difference between revisions

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 ==Examples==
 <StructureSection load='' size='350' side='right' caption='' scene='39/399854/2vaa_consurf_halos_w274_y159/4'>
-With default parameters, the ConSurf Server results have an average [[#Average Pairwise Distance]] (APD) of 1.00<ref name="APD">Tested with 20 arbitrarily selected proteins, mostly enzymes. Average of the average pairwise distance (APD) values: 1.00; range 0.82-1.42.</ref>, and an average of only a few "yellow" residues with insufficient data.<ref name="ISD">Tested with 20 arbitrarily selected proteins, mostly enzymes. Average number of amino acids with insufficient data ("yellow" in ConSurf): 3.5; range 0 to 16.</ref> For the examples below, it was necessary to customize the ConSurf Server job parameters in order to reveal conservation present in proteins with the same function as the query.
+With default parameters, the ConSurf Server results have an average [[#Average Pairwise Distance]] (APD) of 1.00<ref name="APD">Tested with 20 arbitrarily selected proteins, mostly enzymes. Average of the average pairwise distance (APD) values: 1.00; range 0.82-1.42.</ref>, and an average of only a few "yellow" residues with insufficient data.<ref name="ISD">Tested with 20 arbitrarily selected proteins, mostly enzymes. Average number of amino acids with insufficient data ("yellow" in ConSurf): 3.5; range 0 to 16.</ref> For the examples below, it was necessary to [[#Limiting ConSurf Analysis to Proteins of a Single Function|customize the ConSurf Server job parameters]] in order to reveal conservation present in proteins with the same function as the query.
 ===Case #1: MHC===