Converting AlphaFold3 CIF to PDB: Difference between revisions
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# Download the zip file from the [https://alphafoldserver.com AlphaFold3 Server]. | # Download the zip file from the [https://alphafoldserver.com AlphaFold3 Server]. | ||
# Double-click the zip file to unzip it. | # Double-click the zip file to unzip it. | ||
# | # In the newly unzipped folder, find the file with a name ending '''_model_0.cif'''. Drag it into your working folder.<ref name="best">Each job produces 5 .cif files. The file with a name ending _model_0.cif is one of those with the highest overall pTM quality score. The pTM quality score is in the corresponding _summary_confidences_0.json file. Open this file in a [[Plain text editors|text editor]]. Look for the third-from-last line, which begins "ptm": (including the quotes) followed by the overall pTM confidence value.</ref> | ||
# Double-click Jmol.jar to run it. | # Double-click Jmol.jar to run it. | ||
# Drag the _model_0.cif file and drop it into the black window of Jmol. The model should appear. | # Drag the _model_0.cif file and drop it into the black window of Jmol. The model should appear. | ||
