FirstGlance/How to get average pLDDT from AlphaFold models: Difference between revisions
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Eric Martz (talk | contribs) New page: It is easy to get the average confidence (pLDDT) for any range of residues in an AlphaFold model by using [http://firstglance.jmol.org FirstGlance in Jmol]. # Download the predicted s... |
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# Download the predicted structure as a '''.pdb''' file (or '''.cif''' file if .pdb is not available). | # Download the predicted structure as a '''.pdb''' file (or '''.cif''' file if .pdb is not available). | ||
# If only the .cif file is available, [[Converting AlphaFold3 CIF to PDB|convert it to .pdb format]]. | # If only the .cif file is available, [[Converting AlphaFold3 CIF to PDB|convert it to .pdb format]]. | ||
# Go to [http://firstglance.jmol.org FirstGlance in Jmol], and [http://firstglance.jmol.org/where.htm#uploading Upload] the .pdb file. | |||
# After the model is displayed in FirstGlance, scroll down in the upper left panel and click ''Find..'' in the Focus Box: | |||
==See Also== | ==See Also== | ||
*[[AlphaFold/Index]], a list of Proteopedia pages about AlphaFold. | *[[AlphaFold/Index]], a list of Proteopedia pages about AlphaFold. | ||
*[[How to predict structures with AlphaFold]] | *[[How to predict structures with AlphaFold]] | ||
