FirstGlance/How to get average pLDDT from AlphaFold models: Difference between revisions
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It is easy to get the average confidence ([[pLDDT]]) for any range of residues in an AlphaFold model by using [http://firstglance.jmol.org FirstGlance in Jmol]. | It is easy to get the average confidence ([[pLDDT]]) for any range of residues in an AlphaFold model by using [http://firstglance.jmol.org FirstGlance in Jmol]. | ||
* Download the predicted structure as a '''.pdb''' file (or '''.cif''' file if .pdb is not available). | |||
* If only the .cif file is available, [[Converting AlphaFold3 CIF to PDB|convert it to .pdb format]]. | |||
* Go to [http://firstglance.jmol.org FirstGlance in Jmol], and [http://firstglance.jmol.org/where.htm#uploading Upload] the .pdb file. | |||
* After the model is displayed in FirstGlance, in the ''Views'' tab, click ''Find..'' in the Focus Box: | |||
[[Image:Firstglance-find-sequence-range.png]] | |||
==See Also== | ==See Also== | ||
*[[AlphaFold/Index]], a list of Proteopedia pages about AlphaFold. | *[[AlphaFold/Index]], a list of Proteopedia pages about AlphaFold. | ||
*[[How to predict structures with AlphaFold]] | *[[How to predict structures with AlphaFold]] | ||
