How to predict structures with AlphaFold: Difference between revisions
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[[iCn3D]] automatically colors AlphaFold2 Database models loaded from their UniProt IDs. For AlphaFold files opened from your computer, use pLDDT on the pull-down Color menu. | [[iCn3D]] automatically colors AlphaFold2 Database models loaded from their UniProt IDs. For AlphaFold files opened from your computer, use pLDDT on the pull-down Color menu. | ||
[[PyMOL]] and [[ChimeraX]] have no built-in confidence/pLDDT color scheme. Their rainbow/spectrum color schemes for temperature/B-factor color confidence/pLDDT with the AlphaFold color scheme | [[PyMOL]] and [[ChimeraX]] have no built-in confidence/pLDDT color scheme. Their rainbow/spectrum color schemes for temperature/B-factor color confidence/pLDDT with the AlphaFold color scheme inverted. | ||
[http://firstglance.jmol.org/where.htm#uploading Upload] your predicted PDB file to [http://firstglance.jmol.org FirstGlance.Jmol.Org], which has many [http://firstglance.jmol.org/whatis.htm#unique unique conveniences and capabilities]. | [http://firstglance.jmol.org/where.htm#uploading Upload] your predicted PDB file to [http://firstglance.jmol.org FirstGlance.Jmol.Org], which has many [http://firstglance.jmol.org/whatis.htm#unique unique conveniences and capabilities]. | ||
