9ha0: Difference between revisions

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'''Unreleased structure'''


The entry 9ha0 is ON HOLD  until Paper Publication
==Crystal structure of Cu(II)-bound LmrR_V15Bpy variant BVS==
<StructureSection load='9ha0' size='340' side='right'caption='[[9ha0]], [[Resolution|resolution]] 1.75&Aring;' scene=''>
== Structural highlights ==
<table><tr><td colspan='2'>[[9ha0]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/Lactococcus_lactis_subsp._cremoris_MG1363 Lactococcus lactis subsp. cremoris MG1363]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=9HA0 OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=9HA0 FirstGlance]. <br>
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 1.75&#8491;</td></tr>
<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=BP5:3-(2,2-BIPYRIDIN-5-YL)-L-ALANINE'>BP5</scene>, <scene name='pdbligand=CU:COPPER+(II)+ION'>CU</scene>, <scene name='pdbligand=GOL:GLYCEROL'>GOL</scene>, <scene name='pdbligand=IMD:IMIDAZOLE'>IMD</scene></td></tr>
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=9ha0 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=9ha0 OCA], [https://pdbe.org/9ha0 PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=9ha0 RCSB], [https://www.ebi.ac.uk/pdbsum/9ha0 PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=9ha0 ProSAT]</span></td></tr>
</table>
== Function ==
[https://www.uniprot.org/uniprot/A2RI36_LACLM A2RI36_LACLM]
<div style="background-color:#fffaf0;">
== Publication Abstract from PubMed ==
Artificial metalloenzymes (ArMs) are an attractive approach to achieving "new to nature" biocatalytic transformations. In this work, a novel copper-dependent artificial Michaelase (Cu_Michaelase) comprising a genetically encoded copper-binding ligand, i. e. (2,2-bipyridin-5-yl)alanine (BpyA), was developed. For the first time, such an ArM containing a non-canonical metal-binding amino acid was successfully optimized through directed evolution. The evolved Cu_Michaelase was applied in the copper-catalyzed asymmetric addition of 2-acetyl azaarenes to nitroalkenes, yielding various gamma-nitro butyric acid derivatives, which are precursors for a range of high-value-added pharmaceutically relevant compounds, with good yields and high enantioselectivities (up to &gt;99 % yield and 99 % ee). Additionally, the evolved variant could be further used in a preparative-scale synthesis, providing chiral products for diverse derivatizations. X-ray crystal structure analysis confirmed the binding of Cu(II) ions to the BpyA residues and showed that, in principle, there is sufficient space for the 2-acetyl azaarene substrate to coordinate. Kinetic studies showed that the increased catalytic efficiency of the evolved enzyme is due to improvements in apparent K(M) for both substrates and a notable threefold increase in apparent k(cat) for 2-acetyl pyridine. This work illustrates the potential of artificial metalloenzymes exploiting non-canonical metal-binding ligands for new-to-nature biocatalysis.


Authors: Thunnissen, A.M.W.H., Jiang, R., Casilli, F., Aalbers, F., Roelfes, G.
An Artificial Copper-Michaelase Featuring a Genetically Encoded Bipyridine Ligand for Asymmetric Additions to Nitroalkenes.,Jiang R, Casilli F, Thunnissen AWH, Roelfes G Angew Chem Int Ed Engl. 2025 Feb 13:e202423182. doi: 10.1002/anie.202423182. PMID:39945539<ref>PMID:39945539</ref>


Description: Crystal structure of Cu(II)-bound LmrR_V15Bpy variant BVS
From MEDLINE&reg;/PubMed&reg;, a database of the U.S. National Library of Medicine.<br>
[[Category: Unreleased Structures]]
</div>
[[Category: Roelfes, G]]
<div class="pdbe-citations 9ha0" style="background-color:#fffaf0;"></div>
[[Category: Casilli, F]]
== References ==
[[Category: Aalbers, F]]
<references/>
[[Category: Jiang, R]]
__TOC__
[[Category: Thunnissen, A.M.W.H]]
</StructureSection>
[[Category: Lactococcus lactis subsp. cremoris MG1363]]
[[Category: Large Structures]]
[[Category: Aalbers F]]
[[Category: Casilli F]]
[[Category: Jiang R]]
[[Category: Roelfes G]]
[[Category: Thunnissen AMWH]]

Latest revision as of 08:23, 5 March 2025

Crystal structure of Cu(II)-bound LmrR_V15Bpy variant BVS

9ha0, resolution 1.75Å

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