User:Karsten Theis/AI tutorial: Difference between revisions
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moveto 0.0 { -97 855 -510 89.56} 300.0 0.0 0.0 {38.343720000000005 74.45217999999998 85.45410000000003} 34.78371098010064 {0 0 0} 0 0 0 3.0 0.0 0.0; | moveto 0.0 { -97 855 -510 89.56} 300.0 0.0 0.0 {38.343720000000005 74.45217999999998 85.45410000000003} 34.78371098010064 {0 0 0} 0 0 0 3.0 0.0 0.0; | ||
</nowiki> | </nowiki> | ||
<scene name='79/799553/Etransfer/2'>Electron transfer</scene> | |||
<nowiki> | |||
load "=1JRO" filter "biomolecule 2" # The structure contains 2 dimers, we are loading the second dimer | |||
restrict none | |||
define ~focal FES:E, FAD:E, MTE:F # Ligands involved in electron transfer (in chain E, F, not G, H) | |||
select ~focal; wireframe 0.36; Spacefill 25% # ball-and-stick | |||
select (sulfur and MTE:F) or FES:E.FE2; bondOrder single | |||
select 3001:E.S2 or 3002:E.FE1; label "Fe2S2"; color label [xffa500]; # label electron carriers | |||
select FAD:E.O2; label "FAD" # label electron donor | |||
select ~focal; set labelOffset 4 4; # offset for all labels | |||
center visible; zoom 400; spin on # there is no good single view, so spin | |||
set measurementUnits Angstroms # units for the measurements below | |||
measure ([FAD]3005:E.C7M) ([FES]3002:E.S1) # shortest path for electrons | |||
measure ([FES]3002:E.FE2) ([FES]3001:E.S2) | |||
measure ([FES]3001:E.FE1) ([MTE]3003:F.C2) | |||
</nowiki> | |||
<scene name='78/786673/Nagal_galsa_superposition/1'>Superposition</scene> | <scene name='78/786673/Nagal_galsa_superposition/1'>Superposition</scene> | ||
