User:Karsten Theis/AI tutorial: Difference between revisions
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</nowiki> | </nowiki> | ||
<scene name=' | <scene name='10/1076814/Etransfer/1'>Electron transfer</scene> | ||
<nowiki> | <nowiki> | ||
load "=1JRO" filter "biomolecule 2" # The structure contains 2 dimers, we are loading the second dimer | load "=1JRO" filter "biomolecule 2" # The structure contains 2 dimers, we are loading the second dimer | ||
restrict none | restrict none | ||
define ~focal FES:E, FAD:E, MTE:F | define ~focal FES:E, FAD:E, MTE:F, MOS:F # Ligands involved in electron transfer (in chain E, F, not G, H) | ||
select (sulfur and MTE:F) or MOS:E.MO; bondOrder single # show bond between sulfur atoms and molybdenum | |||
select ~focal; wireframe 0.36; Spacefill 25% # ball-and-stick | select ~focal; wireframe 0.36; Spacefill 25% # ball-and-stick | ||
select 3001:E.S2 or 3002:E.FE1; label "Fe2S2"; color label [xffa500]; # label electron carriers | select 3001:E.S2 or 3002:E.FE1; label "Fe2S2"; color label [xffa500]; # label electron carriers | ||
select FAD:E.O2; label "FAD" # label electron donor | select FAD:E.O2; label "FAD" # label electron donor | ||
select MOS:F.MO; label "MoCo" # label electron acceptor | |||
select ~focal; set labelOffset 4 4; # offset for all labels | select ~focal; set labelOffset 4 4; # offset for all labels | ||
center visible; zoom 400; spin on # there is no good single view, so spin | center visible; zoom 400; spin on # there is no good single view, so spin | ||
