User:Karsten Theis/AI tutorial: Difference between revisions

From Proteopedia
Jump to navigationJump to search
Karsten Theis (talk | contribs)
No edit summary
Karsten Theis (talk | contribs)
No edit summary
Line 210: Line 210:


  <nowiki>
  <nowiki>
load =1d9z
load =1d9z                                       # UvrB, a helicase-like protein bound to ATP
restrict none
restrict none
select protein; color gold; cartoon on
select protein; color gold; cartoon on           # The gold domain has most segments, so make everything gold
select 415-595; color red
select not helix and not sheet; cartoon 0.3      # Make coils a bit thicker than default for balance and visibility
select 415-595; color red          
select 157-244; color blue
select 157-244; color blue
select 91-116; color aqua
select 91-116; color aqua                         # beta hairpin, unique to UvrB
select 245-324, 349-378; color lime
select 245-324, 349-378; color lime               # UvrA interaction domain
select MG, ATP, ZN; color silver; spacefill 100%
select MG, ATP, ZN; color silver; spacefill 100% # Ligands in spacefill (Zn is crystallization artifact)
select not helix and not sheet; cartoon 0.3
</nowiki>
</nowiki>