User:Karsten Theis/AI tutorial: Difference between revisions

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<scene name='10/1071246/Trypsin_5mop/5'>Rainbow plus surface</scene>
<scene name='10/1071246/Trypsin_5mop/5'>Rainbow plus surface</scene>
<nowiki>
load =5mop                                                                                # trypsin
restrict none
select protein; cartoon on; color group                                                  # rainbow cartoon
select protein and (57,195) and sidechain and not hydrogen; color cpk; spacefill 25%      # ball ...
select protein and (57,195) and (sidechain or alpha) and not hydrogen; wireframe 0.36    # ...and stick
select protein; isosurface ID "1" SASURFACE                                              # solvent-accessible surface
color isosurface translucent 0.875 white                                                  # white and translucent
isosurface ID "1" fill noMesh noDots notFrontOnly frontlit                                # these settings help to see the cartoon
select all; set hoverLabel "%n %R";                                                      # residue numbers and name
select [CA]; set hoverLabel "Calcium";                                                    # spell out "calcium" to distinguish from alpha-carbon
</nowiki>