DNA polymerase 3D structures: Difference between revisions

**[[3q8r]], [[3q8s]], [[3h4b]], [[3h4d]], [[3gv5]], [[3gv7]], [[3gv8]], [[3epg]], [[3epi]], [[2fll]], [[2fln]], [[2flp]], [[2dpi]], [[2dpj]], [[2alz]], [[1zet]], [[1t3n]], [[4ebc]], [[4ebd]], [[4ebe]], [[4fs1]], [[4fs2]], [[4eyh]], [[4eyi]], [[3g6v]], [[3g6x]], [[3g6y]], [[5ulx]], [[5ulw]], [[5kt7]], [[5kt6]], [[5kt5]], [[5kt4]], [[5kt3]], [[5kt2]] - hDpo  + DNA + nucleotide<br />

**[[3ngd]], [[3osn]], [[3h40]] - hDpo  catalytic fragment + DNA <br />

**[[2ktf]] - hDpo  + ubiquitin<br />

**[[2l0f]], [[2l0g]] - hDpo + ubiquitin – NMR<br />

**[[2khu]] - hDpo ubiquitin binding motif – NMR<br />

**[[2khw]] - hDpo ubiquitin binding motif + ubiquitin – NMR<br />

**[[2kwu]], [[2kwv]] - mDpo  C-terminal + ubiquitin - NMR<br />

**[[3ai4]] - mDpo /yEGFP<br />

**[[1t94]] - hDpo <br />

**[[3in5]], [[5w2c]], [[5w2a]], [[5t14]] - hDpo  + DNA<br />

**[[2w7o]], [[2w7p]], [[2oh2]], [[3pzp]], [[4u6p]], [[6cst]], [[6bs1]], [[6brx]], [[5w2a]], [[5w2c]] - hDpo  + DNA + nucleotide<br />

**[[7nv0]], [[7nv1]] - hDpo  + PCNA + DNA + nucleotide<br />

**[[4u7c]], [[4y6p]] - hDpo  + DNA + benzopyrene derivative<br />

**[[2lsi]] - hDpo  peptide + hRev1<br />

**[[2lsk]] - mDpo  + DNA repair protein Rev1<br />

**[[2htf]], [[2dun]] - hDpo  BRCT domain residues 24-143 – NMR<br />

**[[4lzd]] - hDpo  residues 132-494 <br />

**[[4lzg]], [[5tyz]], [[5tyy]], [[5tyx]], [[5tyw]], [[5tyv]], [[5tyu]], [[5tyg]], [[5tyf]], [[5tye]], [[5tyd]], [[5tyc]], [[5tyb]], [[5txz]], [[5txx]], [[5tws]], [[5twr]], [[5twq]], [[5twp]], [[5zlc]] - hDpo  residues 132-494 + DNA <br />

**[[4yd2]], [[4ycx]] - hDpo  residues 132-494 (mutant) + DNA <br />

**[[6ak5]] - hDpo  residues 132-397+411-494 + nucleotide derivative<br />

**[[6ipn]], [[6ipm]], [[6ipl]], [[6ipk]], [[6ipj]], [[6ipi]], [[6iph]], [[6aec]], [[6aeh]], [[6ak6]] - hDpo  residues 132-397+411-494 (mutant) + nucleotide derivative<br />

**[[6vez]], [[6vf0]], [[6vf1]], [[6vf2]], [[6vf3]], [[6vf4]], [[6vf5]], [[6vf6]], [[6vf7]], [[6vf8]], [[6vf9]], [[6vfa]], [[6vfb]], [[6vfc]], [[7co6]], [[7co8]], [[7co9]], [[7coa]], [[7cob]], [[7cod]], [[7kss]], [[7kst]], [[7ksu]], [[7ksv]], [[7ksw]], [[7ksx]], [[7ksy]], [[7ksz]], [[7kt0]], [[7kt1]], [[7kt2]], [[7kt3]], [[7kt4]], [[7kt5]], [[7kt6]], [[7kt7]], [[7kt9]], [[7kta]], [[7ktb]], [[7ktc]], [[7ktd]], [[7kte]], [[7ktf]], [[7ktg]], [[7kth]], [[7kti]], [[7ktj]], [[7ktk]], [[7ktl]], [[7ktm]], [[7ktn]] - hDpo  + DNA + nucleotide derivative<br />

**[[4m04]], [[4m0a]], [[4yd1]], [[6ipg]], [[6ipf]], [[6ipe]], [[6ipd]], [[5vz7]], [[5vz8]], [[5vz9]], [[5vza]], [[5vzb]], [[5vzc]], [[5vzd]], [[5vze]], [[5vzf]], [[5vzg]], [[5vzh]], [[5vzi]], [[6ak8]], [[6ak9]], [[6akh]], [[6p1m]], [[6p1n]], [[6p1o]], [[6p1p]], [[6p1q]], [[6p1r]], [[6p1s]], [[6p1t]], [[6p1u]], [[6p1v]], [[6p1w]], [[7coc]] - hDpo  residues 132-494+411-494 (mutant) + DNA + nucleotide derivative<br />

**[[2ihm]] - mDpo  catalytic domain + DNA <br />

**[[3oiq]] - yDpo  + cell division control protein 13 <br />

**[[3flo]], [[3lgb]] - yDpo  subunits A,B<br />

**[[8foc]], [[8fod]], [[8foe]] - yDpo  subunits A,B + primase small+large subunits – Cryo EM<br />

**[[8fok]] - yDpo  subunits A,B + primase small+large subunits + DNA – Cryo EM<br />

**[[4b08]], [[4fvm]] - yDpo  subunit A<br />

**[[4fxd]], [[4fyd]] - yDpo  subunit A + RNA + DNA<br />

**[[5oki]] - yDpo  subunit A + DCC1 + chromosome fidelity protein<br />

**[[3iay]] - yDpo  catalytic subunit + DNA<br />

**[[6p1h]] - yDpo  catalytic+small+3 subunits + DNA + nucleotide – Cryo EM<br />

**[[6wjv]] - yDpo II  – Cryo EM<br />

**[[6hv8]] - yDpo II  subunit A+B – Cryo EM<br />

**[[8xgc]] - yDpo II  in replication origin complex – Cryo EM<br />

**[[3oha]], [[3ohb]], [[3mfh]] - yDpo  (mutant) + DNA<br />

**[[6i8a]], [[6qib]], [[7r3x]], [[7r3y]] - yDpo II  subunit A + DNA + nucleotide <br />

**[[6g0a]], [[6fwk]], [[3mfi]], [[4m8o]] - yDpo II  subunit A (mutant) + DNA + nucleotide derivative<br />

**[[6s1c]], [[6s2e]], [[6s2f]] - yDpo II  subunit A (mutant) + DCC1 + chromosome transmission fidelity proteins<br />

**[[6hv9]] - yDpo II  subunit A+B + CMG + DNA + nucleotide – Cryo EM<br />

**[[2r8j]], [[2r8k]], [[4ptf]] - yDpo  catalytic domain + DNA + nucleotide <br />

**[[6h1v]], [[8b67]], [[8b6k]], [[8b77]], [[8b79]] - yDpo  catalytic domain (mutant) + DNA + nucleotide <br />

**[[2xgp]], [[2xgq]], [[2wtf]] - yDpo  + DNA<br />

**[[9b8r]] - yDpo  + DNA – Cryo EM<br />

**[[7lxd]] - yDpo   catalytic+processivity subunits + hDpo delta subunits 3+small – Cryo EM<br />

**[[7s0t]] - yDpo   catalytic+processivity subunits + hDpo delta subunits 3+small + DNA – Cryo EM<br />

**[[8tlq]] - yDpo   catalytic+processivity subunits + hDpo delta subunit 3 + DNA + dCTP – Cryo EM<br />

**[[5y27]], [[5y26]] - Dpo subunit D + transcription factor – fission yeast<br />

**[[1jih]], [[5vtp]] – yDpo  catalytic domain<br />