9w0m: Difference between revisions

Latest revision as of 06:57, 3 June 2026

Cryo-EM structure of S1P2 in complex with heterotrimeric G protein

Structural highlights

9w0m is a 4 chain structure with sequence from Homo sapiens. Full crystallographic information is available from OCA. For a guided tour on the structure components use FirstGlance.
Method:	Electron Microscopy, Resolution 3.8Å
Resources:	FirstGlance, OCA, PDBe, RCSB, PDBsum, ProSAT

Disease

S1PR2_HUMAN Rare autosomal recessive non-syndromic sensorineural deafness type DFNB. The disease is caused by variants affecting the gene represented in this entry.

Function

S1PR2_HUMAN Receptor for the lysosphingolipid sphingosine 1-phosphate (S1P) (PubMed:10617617, PubMed:25274307). S1P is a bioactive lysophospholipid that elicits diverse physiological effects on most types of cells and tissues (PubMed:10617617). When expressed in rat HTC4 hepatoma cells, is capable of mediating S1P-induced cell proliferation and suppression of apoptosis (PubMed:10617617). Receptor for the chemokine-like protein FAM19A5 (PubMed:29453251). Mediates the inhibitory effect of FAM19A5 on vascular smooth muscle cell proliferation and migration (By similarity). In lymphoid follicles, couples the binding of S1P to the activation of GNA13 and downstream inhibition of AKT activation leading to suppression of germinal center (GC) B cell growth and migration outside the GC niche.[UniProtKB:P47752]^[1] ^[2] ^[3]

References

↑ An S, Zheng Y, Bleu T. Sphingosine 1-phosphate-induced cell proliferation, survival, and related signaling events mediated by G protein-coupled receptors Edg3 and Edg5. J Biol Chem. 2000 Jan 7;275(1):288-96. PMID:10617617 doi:10.1074/jbc.275.1.288
↑ Muppidi JR, Schmitz R, Green JA, Xiao W, Larsen AB, Braun SE, An J, Xu Y, Rosenwald A, Ott G, Gascoyne RD, Rimsza LM, Campo E, Jaffe ES, Delabie J, Smeland EB, Braziel RM, Tubbs RR, Cook JR, Weisenburger DD, Chan WC, Vaidehi N, Staudt LM, Cyster JG. Loss of signalling via Gα13 in germinal centre B-cell-derived lymphoma. Nature. 2014 Dec 11;516(7530):254-8. PMID:25274307 doi:10.1038/nature13765
↑ Wang Y, Chen D, Zhang Y, Wang P, Zheng C, Zhang S, Yu B, Zhang L, Zhao G, Ma B, Cai Z, Xie N, Huang S, Liu Z, Mo X, Guan Y, Wang X, Fu Y, Ma D, Wang Y, Kong W. Novel Adipokine, FAM19A5, Inhibits Neointima Formation After Injury Through Sphingosine-1-Phosphate Receptor 2. Circulation. 2018 Jul 3;138(1):48-63. PMID:29453251 doi:10.1161/CIRCULATIONAHA.117.032398

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OCA

[1] An S, Zheng Y, Bleu T. Sphingosine 1-phosphate-induced cell proliferation, survival, and related signaling events mediated by G protein-coupled receptors Edg3 and Edg5. J Biol Chem. 2000 Jan 7;275(1):288-96. PMID:10617617 doi:10.1074/jbc.275.1.288

[2] Muppidi JR, Schmitz R, Green JA, Xiao W, Larsen AB, Braun SE, An J, Xu Y, Rosenwald A, Ott G, Gascoyne RD, Rimsza LM, Campo E, Jaffe ES, Delabie J, Smeland EB, Braziel RM, Tubbs RR, Cook JR, Weisenburger DD, Chan WC, Vaidehi N, Staudt LM, Cyster JG. Loss of signalling via Gα13 in germinal centre B-cell-derived lymphoma. Nature. 2014 Dec 11;516(7530):254-8. PMID:25274307 doi:10.1038/nature13765

[3] Wang Y, Chen D, Zhang Y, Wang P, Zheng C, Zhang S, Yu B, Zhang L, Zhao G, Ma B, Cai Z, Xie N, Huang S, Liu Z, Mo X, Guan Y, Wang X, Fu Y, Ma D, Wang Y, Kong W. Novel Adipokine, FAM19A5, Inhibits Neointima Formation After Injury Through Sphingosine-1-Phosphate Receptor 2. Circulation. 2018 Jul 3;138(1):48-63. PMID:29453251 doi:10.1161/CIRCULATIONAHA.117.032398

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[2]

[3]

@@ Line 1: / Line 1: @@
-'''Unreleased structure'''
-The entry 9w0m is ON HOLD  until Paper Publication
+==Cryo-EM structure of S1P2 in complex with heterotrimeric G protein==
+<StructureSection load='9w0m' size='340' side='right'caption='[[9w0m]], [[Resolution|resolution]] 3.80&Aring;' scene=''>
-Authors: Wu, B., Zhao, Q., Tan, Q.
+== Structural highlights ==
+<table><tr><td colspan='2'>[[9w0m]] is a 4 chain structure with sequence from [https://en.wikipedia.org/wiki/Homo_sapiens Homo sapiens]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=9W0M OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=9W0M FirstGlance]. <br>
-Description: Cryo-EM structure of S1P2 in complex with heterotrimeric G protein
+</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">Electron Microscopy, [[Resolution|Resolution]] 3.8&#8491;</td></tr>
-[[Category: Unreleased Structures]]
+<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=9w0m FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=9w0m OCA], [https://pdbe.org/9w0m PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=9w0m RCSB], [https://www.ebi.ac.uk/pdbsum/9w0m PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=9w0m ProSAT]</span></td></tr>
-[[Category: Tan, Q]]
+</table>
-[[Category: Wu, B]]
+== Disease ==
-[[Category: Zhao, Q]]
+[https://www.uniprot.org/uniprot/S1PR2_HUMAN S1PR2_HUMAN] Rare autosomal recessive non-syndromic sensorineural deafness type DFNB. The disease is caused by variants affecting the gene represented in this entry.
+== Function ==
+[https://www.uniprot.org/uniprot/S1PR2_HUMAN S1PR2_HUMAN] Receptor for the lysosphingolipid sphingosine 1-phosphate (S1P) (PubMed:10617617, PubMed:25274307). S1P is a bioactive lysophospholipid that elicits diverse physiological effects on most types of cells and tissues (PubMed:10617617). When expressed in rat HTC4 hepatoma cells, is capable of mediating S1P-induced cell proliferation and suppression of apoptosis (PubMed:10617617). Receptor for the chemokine-like protein FAM19A5 (PubMed:29453251). Mediates the inhibitory effect of FAM19A5 on vascular smooth muscle cell proliferation and migration (By similarity). In lymphoid follicles, couples the binding of S1P to the activation of GNA13 and downstream inhibition of AKT activation leading to suppression of germinal center (GC) B cell growth and migration outside the GC niche.[UniProtKB:P47752]<ref>PMID:10617617</ref> <ref>PMID:25274307</ref> <ref>PMID:29453251</ref>
+== References ==
+<references/>
+__TOC__
+</StructureSection>
+[[Category: Homo sapiens]]
+[[Category: Large Structures]]
+[[Category: Tan Q]]
+[[Category: Wu B]]
+[[Category: Zhao Q]]

9w0m: Difference between revisions

Latest revision as of 06:57, 3 June 2026

Cryo-EM structure of S1P2 in complex with heterotrimeric G protein

Structural highlights

Disease

Function

References

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