9y6p: Difference between revisions

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~~'''Unreleased structure'''~~

~~The entry~~ 9y6p is ~~ON HOLD until Paper Publication~~

==Cryo-EM structure of PI(3,5)P2-bound full-length mouse TRPML2 channel in lipid nanodisc II==

~~Authors~~:

== Structural highlights ==

<table><tr><td colspan='2'>[[9y6p]] is a 4 chain structure with sequence from [https://en.wikipedia.org/wiki/Mus_musculus Mus musculus]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=9Y6P OCA]. For a guided tour on the structure components use [https://proteopedia.org/fgij/fg.htm?mol=9Y6P FirstGlance].

~~Description~~:

</td></tr><tr id='method'><td class="sblockLbl">[[Empirical_models|Method:]]</td><td class="sblockDat" id="methodDat">Electron Microscopy, [[Resolution|Resolution]] 3.88Å</td></tr>

[[Category: ~~Unreleased~~ Structures]]

<tr id='ligand'><td class="sblockLbl">[[Ligand|Ligands:]]</td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=EUJ:[(2~{R})-2-octanoyloxy-3-[oxidanyl-[(2~{R},3~{R},5~{S},6~{R})-2,4,6-tris(oxidanyl)-3,5-diphosphonooxy-cyclohexyl]oxy-phosphoryl]oxy-propyl]+octanoate'>EUJ</scene></td></tr>

<tr id='resources'><td class="sblockLbl">Resources:</td><td class="sblockDat">[https://proteopedia.org/fgij/fg.htm?mol=9y6p FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=9y6p OCA], [https://pdbe.org/9y6p PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=9y6p RCSB], [https://www.ebi.ac.uk/pdbsum/9y6p PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=9y6p ProSAT]</td></tr>

</table>

== Function ==

[https://www.uniprot.org/uniprot/MCLN2_MOUSE MCLN2_MOUSE] Nonselective cation channel probably playing a role in the regulation of membrane trafficking events. Acts as a Ca(2+)-permeable cation channel with inwardly rectifying activity (PubMed:19763610). May activate ARF6 and be involved in the trafficking of GPI-anchored cargo proteins to the cell surface via the ARF6-regulated recycling pathway (By similarity). May play a role in immune processes. In adaptive immunity, TRPML2 and TRPML1 may play redundant roles in the function of the specialized lysosomes of B cells (PubMed:17050035). In the innate immune response, may play a role in the regulation of chemokine secretion and macrophage migration (PubMed:26432893). Through a possible and probably tissue-specific heteromerization with MCOLN1 may be at least in part involved in many lysosome-dependent cellular events. Also functions as a Fe(2+) permeable channel (PubMed:18794901).[UniProtKB:Q8IZK6]<ref>PMID:17050035</ref> <ref>PMID:18794901</ref> <ref>PMID:19763610</ref> <ref>PMID:22753890</ref> <ref>PMID:26432893</ref>

== References ==

__TOC__

</StructureSection>

[[Category: Large Structures]]

[[Category: Mus musculus]]

[[Category: Park S]]

[[Category: Yang J]]

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@@ Line 1: / Line 1: @@
-'''Unreleased structure'''
-The entry 9y6p is ON HOLD  until Paper Publication
+==Cryo-EM structure of PI(3,5)P2-bound full-length mouse TRPML2 channel in lipid nanodisc II==
+<StructureSection load='9y6p' size='340' side='right'caption='[[9y6p]], [[Resolution|resolution]] 3.88&Aring;' scene=''>
-Authors:
+== Structural highlights ==
+<table><tr><td colspan='2'>[[9y6p]] is a 4 chain structure with sequence from [https://en.wikipedia.org/wiki/Mus_musculus Mus musculus]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=9Y6P OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=9Y6P FirstGlance]. <br>
-Description:
+</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">Electron Microscopy, [[Resolution|Resolution]] 3.88&#8491;</td></tr>
-[[Category: Unreleased Structures]]
+<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=EUJ:[(2~{R})-2-octanoyloxy-3-[oxidanyl-[(2~{R},3~{R},5~{S},6~{R})-2,4,6-tris(oxidanyl)-3,5-diphosphonooxy-cyclohexyl]oxy-phosphoryl]oxy-propyl]+octanoate'>EUJ</scene></td></tr>
+<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=9y6p FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=9y6p OCA], [https://pdbe.org/9y6p PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=9y6p RCSB], [https://www.ebi.ac.uk/pdbsum/9y6p PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=9y6p ProSAT]</span></td></tr>
+</table>
+== Function ==
+[https://www.uniprot.org/uniprot/MCLN2_MOUSE MCLN2_MOUSE] Nonselective cation channel probably playing a role in the regulation of membrane trafficking events. Acts as a Ca(2+)-permeable cation channel with inwardly rectifying activity (PubMed:19763610). May activate ARF6 and be involved in the trafficking of GPI-anchored cargo proteins to the cell surface via the ARF6-regulated recycling pathway (By similarity). May play a role in immune processes. In adaptive immunity, TRPML2 and TRPML1 may play redundant roles in the function of the specialized lysosomes of B cells (PubMed:17050035). In the innate immune response, may play a role in the regulation of chemokine secretion and macrophage migration (PubMed:26432893). Through a possible and probably tissue-specific heteromerization with MCOLN1 may be at least in part involved in many lysosome-dependent cellular events. Also functions as a Fe(2+) permeable channel (PubMed:18794901).[UniProtKB:Q8IZK6]<ref>PMID:17050035</ref> <ref>PMID:18794901</ref> <ref>PMID:19763610</ref> <ref>PMID:22753890</ref> <ref>PMID:26432893</ref>
+== References ==
+<references/>
+__TOC__
+</StructureSection>
+[[Category: Large Structures]]
+[[Category: Mus musculus]]
+[[Category: Park S]]
+[[Category: Yang J]]