AlphaFold/Index: Difference between revisions
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==Interpreting Predictions== | ==Interpreting Predictions== | ||
*[[AlphaFold pLDDT and expected distance error]] | *[[AlphaFold pLDDT and expected distance error]] | ||
*[[FirstGlance/How_to_get_average_pLDDT_from_AlphaFold_models|How to get average pLDDT from AlphaFold models]]: | *[[FirstGlance/How_to_get_average_pLDDT_from_AlphaFold_models|How to get average pLDDT from AlphaFold models]]: When any subset of residues (such as a sequence range) is selected (using <i>Find</i>) in FirstGlance in Jmol, listing the found residues reports their average pLDDT. | ||
When any subset of residues (such as a sequence range) is selected (using <i>Find</i>) in FirstGlance in Jmol, listing the found residues reports their average pLDDT. | |||
*[[Calculating GDT TS]] the Global Distance Test Total Score, one of the metrics used for judging accuracy of predictions in the [[CASP]] competitions. | *[[Calculating GDT TS]] the Global Distance Test Total Score, one of the metrics used for judging accuracy of predictions in the [[CASP]] competitions. | ||
*[[User:Eric Martz/AlphaFold3 case studies|AlphaFold3 case studies]] includes a case that AlphaFold3 cannot predict. | *[[User:Eric Martz/AlphaFold3 case studies|AlphaFold3 case studies]] includes a case that AlphaFold3 cannot predict. | ||
