FirstGlance/How to get average pLDDT from AlphaFold models: Difference between revisions
From Proteopedia
Jump to navigationJump to search
Eric Martz (talk | contribs) No edit summary |
Eric Martz (talk | contribs) No edit summary |
||
| Line 1: | Line 1: | ||
It is easy to get the average confidence ([[pLDDT]]) for any range of residues in an [[How to predict structures with AlphaFold|AlphaFold model]] by using [http://firstglance.jmol.org FirstGlance in Jmol]. | It is easy to get the average confidence ([[pLDDT]]) for any range of residues in an [[How to predict structures with AlphaFold|AlphaFold model]] by using [http://firstglance.jmol.org FirstGlance in Jmol]. | ||
(Note that [https://alphafold.ebi.ac.uk/ AlphaFold Database] assigns the same pLDDT value to all atoms in an amino acid, while [https://alphafoldserver.com/ AlphaFold3] assigns different pLDDT values to each atom in an amino acid.) | |||
* Download the predicted structure as a '''.pdb''' file (or '''.cif''' file if .pdb is not available). | * Download the predicted structure as a '''.pdb''' file (or '''.cif''' file if .pdb is not available). | ||
