9tk7: Difference between revisions

From Proteopedia
Jump to navigationJump to search
← Older edit
OCA (talk | contribs)
Bots, Bureaucrats, journal, Administrators
3,328,572 edits
No edit summary
OCA (talk | contribs)
Bots, Bureaucrats, journal, Administrators
3,328,572 edits
No edit summary
 
Line 1: Line 1:
'''Unreleased structure'''


The entry 9tk7 is ON HOLD  until Paper Publication
==Cryogenic temperature structure of urocanate reductase in complex with imidazole propionate and sulfate==
<StructureSection load='9tk7' size='340' side='right'caption='[[9tk7]], [[Resolution|resolution]] 1.50&Aring;' scene=''>
== Structural highlights ==
<table><tr><td colspan='2'>[[9tk7]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Shewanella_oneidensis_MR-1 Shewanella oneidensis MR-1]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=9TK7 OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=9TK7 FirstGlance]. <br>
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 1.5&#8491;</td></tr>
<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=FAD:FLAVIN-ADENINE+DINUCLEOTIDE'>FAD</scene>, <scene name='pdbligand=GOL:GLYCEROL'>GOL</scene>, <scene name='pdbligand=MWQ:3-(1~{H}-imidazol-5-yl)propanoic+acid'>MWQ</scene>, <scene name='pdbligand=NA:SODIUM+ION'>NA</scene>, <scene name='pdbligand=SO4:SULFATE+ION'>SO4</scene></td></tr>
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=9tk7 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=9tk7 OCA], [https://pdbe.org/9tk7 PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=9tk7 RCSB], [https://www.ebi.ac.uk/pdbsum/9tk7 PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=9tk7 ProSAT]</span></td></tr>
</table>
== Function ==
[https://www.uniprot.org/uniprot/URDA_SHEON URDA_SHEON] Catalyzes the two-electron reduction of urocanate to dihydrourocanate (also named imidazole propionate or deamino-histidine). The physiological electron donor is unknown; it might be the membrane-bound tetraheme cytochrome c (CymA). Enables anaerobic growth with urocanate as a sole terminal electron acceptor, and thus can provide the cells with a niche where no other bacteria can compete and survive. Is unable to reduce cinnamate and other unsaturated organic acids such as acrylic, crotonic, fumaric and orotic acids. Has no fumarate reductase or succinate dehydrogenase activity.<ref>PMID:23078170</ref>
<div style="background-color:#fffaf0;">
== Publication Abstract from PubMed ==
Urocanate reductase (UrdA) is a bacterial enzyme that converts urocanic acid to imidazole propionate. Its catalytic residue Arg411 undergoes a large conformational change in the substrate-bound versus product-bound states. In contrast to previously studied cryo-conditions, the room-temperature X-ray data of UrdA presented here show that the occupancy distribution of Arg411 is affected by crystal cryocooling. We further provide evidence that a phosphate ion stabilizes the substrate complex and can bias the conformation of Arg411. Both room-temperature and cryogenic X-ray datasets were essential to elucidate the dynamic nature of the UrdA active site, highlighting the importance of collecting data at both temperatures, as each may reveal distinct conformational states.


Authors: Aggarwal, S., Gurav, N., Oksanen, E., Lindkvist-Petersson, K., Venskutonyte, R.
Structural insights into urocanate reductase using room-temperature X-ray crystallography.,Aggarwal S, Gurav N, Oksanen E, Lindkvist-Petersson K, Venskutonyte R Acta Crystallogr D Struct Biol. 2026 Jun 1. doi: 10.1107/S2059798326003360. PMID:42083916<ref>PMID:42083916</ref>


Description: Cryogenic temperature structure of urocanate reductase in complex with imidazole propionate and sulfate
From MEDLINE&reg;/PubMed&reg;, a database of the U.S. National Library of Medicine.<br>
[[Category: Unreleased Structures]]
</div>
[[Category: Aggarwal, S]]
<div class="pdbe-citations 9tk7" style="background-color:#fffaf0;"></div>
[[Category: Lindkvist-Petersson, K]]
== References ==
[[Category: Gurav, N]]
<references/>
[[Category: Venskutonyte, R]]
__TOC__
[[Category: Oksanen, E]]
</StructureSection>
[[Category: Large Structures]]
[[Category: Shewanella oneidensis MR-1]]
[[Category: Aggarwal S]]
[[Category: Gurav N]]
[[Category: Lindkvist-Petersson K]]
[[Category: Oksanen E]]
[[Category: Venskutonyte R]]
Retrieved from "https://proteopedia.org/9tk7"