10fa: Difference between revisions

Line 1:

~~'''Unreleased structure'''~~

~~The entry~~ 10fa is ~~ON HOLD until Paper Publication~~

==E. coli tRNA guanine transgylcosylase==

~~Authors~~:

== Structural highlights ==

<table><tr><td colspan='2'>[[10fa]] is a 4 chain structure with sequence from [https://en.wikipedia.org/wiki/Escherichia_coli Escherichia coli]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=10FA OCA]. For a guided tour on the structure components use [https://proteopedia.org/fgij/fg.htm?mol=10FA FirstGlance].

~~Description~~:

</td></tr><tr id='method'><td class="sblockLbl">[[Empirical_models|Method:]]</td><td class="sblockDat" id="methodDat">Electron Microscopy, [[Resolution|Resolution]] 3.52Å</td></tr>

[[Category: ~~Unreleased~~ Structures]]

<tr id='ligand'><td class="sblockLbl">[[Ligand|Ligands:]]</td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=ZN:ZINC+ION'>ZN</scene></td></tr>

<tr id='resources'><td class="sblockLbl">Resources:</td><td class="sblockDat">[https://proteopedia.org/fgij/fg.htm?mol=10fa FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=10fa OCA], [https://pdbe.org/10fa PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=10fa RCSB], [https://www.ebi.ac.uk/pdbsum/10fa PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=10fa ProSAT]</td></tr>

</table>

== Function ==

[https://www.uniprot.org/uniprot/TGT_ECOLI TGT_ECOLI] Catalyzes the base-exchange of a guanine (G) residue with the queuine precursor 7-aminomethyl-7-deazaguanine (PreQ1) at position 34 (anticodon wobble position) in tRNAs with GU(N) anticodons (tRNA-Asp, -Asn, -His and -Tyr). Catalysis occurs through a double-displacement mechanism. The nucleophile active site attacks the C1' of nucleotide 34 to detach the guanine base from the RNA, forming a covalent enzyme-RNA intermediate. The proton acceptor active site deprotonates the incoming PreQ1, allowing a nucleophilic attack on the C1' of the ribose to form the product. After dissociation, two additional enzymatic reactions on the tRNA convert PreQ1 to queuine (Q), resulting in the hypermodified nucleoside queuosine (7-(((4,5-cis-dihydroxy-2-cyclopenten-1-yl)amino)methyl)-7-deazaguanosine).[HAMAP-Rule:MF_00168]<ref>PMID:11714265</ref> <ref>PMID:12909636</ref>

== References ==

__TOC__

</StructureSection>

[[Category: Escherichia coli]]

[[Category: Large Structures]]

[[Category: Devaraj N]]

[[Category: Harjung A]]

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@@ Line 1: / Line 1: @@
-'''Unreleased structure'''
-The entry 10fa is ON HOLD  until Paper Publication
+==E. coli tRNA guanine transgylcosylase==
+<StructureSection load='10fa' size='340' side='right'caption='[[10fa]], [[Resolution|resolution]] 3.52&Aring;' scene=''>
-Authors:
+== Structural highlights ==
+<table><tr><td colspan='2'>[[10fa]] is a 4 chain structure with sequence from [https://en.wikipedia.org/wiki/Escherichia_coli Escherichia coli]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=10FA OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=10FA FirstGlance]. <br>
-Description:
+</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">Electron Microscopy, [[Resolution|Resolution]] 3.52&#8491;</td></tr>
-[[Category: Unreleased Structures]]
+<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=ZN:ZINC+ION'>ZN</scene></td></tr>
+<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=10fa FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=10fa OCA], [https://pdbe.org/10fa PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=10fa RCSB], [https://www.ebi.ac.uk/pdbsum/10fa PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=10fa ProSAT]</span></td></tr>
+</table>
+== Function ==
+[https://www.uniprot.org/uniprot/TGT_ECOLI TGT_ECOLI] Catalyzes the base-exchange of a guanine (G) residue with the queuine precursor 7-aminomethyl-7-deazaguanine (PreQ1) at position 34 (anticodon wobble position) in tRNAs with GU(N) anticodons (tRNA-Asp, -Asn, -His and -Tyr). Catalysis occurs through a double-displacement mechanism. The nucleophile active site attacks the C1' of nucleotide 34 to detach the guanine base from the RNA, forming a covalent enzyme-RNA intermediate. The proton acceptor active site deprotonates the incoming PreQ1, allowing a nucleophilic attack on the C1' of the ribose to form the product. After dissociation, two additional enzymatic reactions on the tRNA convert PreQ1 to queuine (Q), resulting in the hypermodified nucleoside queuosine (7-(((4,5-cis-dihydroxy-2-cyclopenten-1-yl)amino)methyl)-7-deazaguanosine).[HAMAP-Rule:MF_00168]<ref>PMID:11714265</ref> <ref>PMID:12909636</ref>
+== References ==
+<references/>
+__TOC__
+</StructureSection>
+[[Category: Escherichia coli]]
+[[Category: Large Structures]]
+[[Category: Devaraj N]]
+[[Category: Harjung A]]