28jc: Difference between revisions

Line 1:

~~'''Unreleased structure'''~~

~~The entry~~ 28jc is ~~ON HOLD until Paper Publication~~

==RNA polymerase II bound to RPAP2 and Gdown1==

~~Authors~~:

== Structural highlights ==

<table><tr><td colspan='2'>[[28jc]] is a 10 chain structure with sequence from [https://en.wikipedia.org/wiki/Homo_sapiens Homo sapiens]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=28JC OCA]. For a guided tour on the structure components use [https://proteopedia.org/fgij/fg.htm?mol=28JC FirstGlance].

~~Description~~:

</td></tr><tr id='method'><td class="sblockLbl">[[Empirical_models|Method:]]</td><td class="sblockDat" id="methodDat">Electron Microscopy, [[Resolution|Resolution]] 2.94Å</td></tr>

[[Category: ~~Unreleased~~ Structures]]

<tr id='ligand'><td class="sblockLbl">[[Ligand|Ligands:]]</td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=ZN:ZINC+ION'>ZN</scene></td></tr>

<tr id='resources'><td class="sblockLbl">Resources:</td><td class="sblockDat">[https://proteopedia.org/fgij/fg.htm?mol=28jc FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=28jc OCA], [https://pdbe.org/28jc PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=28jc RCSB], [https://www.ebi.ac.uk/pdbsum/28jc PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=28jc ProSAT]</td></tr>

</table>

== Function ==

[https://www.uniprot.org/uniprot/RPB4_HUMAN RPB4_HUMAN] DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Component of RNA polymerase II which synthesizes mRNA precursors and many functional non-coding RNAs. Pol II is the central component of the basal RNA polymerase II transcription machinery. It is composed of mobile elements that move relative to each other. RPB4 is part of a subcomplex with RPB7 that binds to a pocket formed by RPB1, RPB2 and RPB6 at the base of the clamp element. The RBP4-RPB7 subcomplex seems to lock the clamp via RPB7 in the closed conformation thus preventing double-stranded DNA to enter the active site cleft. The RPB4-RPB7 subcomplex binds single-stranded DNA and RNA (By similarity).<ref>PMID:9852112</ref>

== References ==

__TOC__

</StructureSection>

[[Category: Homo sapiens]]

[[Category: Large Structures]]

[[Category: Dienemann C]]

[[Category: Schmitzova J]]

[[Category: Zhan Y]]

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@@ Line 1: / Line 1: @@
-'''Unreleased structure'''
-The entry 28jc is ON HOLD  until Paper Publication
+==RNA polymerase II bound to RPAP2 and Gdown1==
+<StructureSection load='28jc' size='340' side='right'caption='[[28jc]], [[Resolution|resolution]] 2.94&Aring;' scene=''>
-Authors:
+== Structural highlights ==
+<table><tr><td colspan='2'>[[28jc]] is a 10 chain structure with sequence from [https://en.wikipedia.org/wiki/Homo_sapiens Homo sapiens]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=28JC OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=28JC FirstGlance]. <br>
-Description:
+</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">Electron Microscopy, [[Resolution|Resolution]] 2.94&#8491;</td></tr>
-[[Category: Unreleased Structures]]
+<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=ZN:ZINC+ION'>ZN</scene></td></tr>
+<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=28jc FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=28jc OCA], [https://pdbe.org/28jc PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=28jc RCSB], [https://www.ebi.ac.uk/pdbsum/28jc PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=28jc ProSAT]</span></td></tr>
+</table>
+== Function ==
+[https://www.uniprot.org/uniprot/RPB4_HUMAN RPB4_HUMAN] DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Component of RNA polymerase II which synthesizes mRNA precursors and many functional non-coding RNAs. Pol II is the central component of the basal RNA polymerase II transcription machinery. It is composed of mobile elements that move relative to each other. RPB4 is part of a subcomplex with RPB7 that binds to a pocket formed by RPB1, RPB2 and RPB6 at the base of the clamp element. The RBP4-RPB7 subcomplex seems to lock the clamp via RPB7 in the closed conformation thus preventing double-stranded DNA to enter the active site cleft. The RPB4-RPB7 subcomplex binds single-stranded DNA and RNA (By similarity).<ref>PMID:9852112</ref>
+== References ==
+<references/>
+__TOC__
+</StructureSection>
+[[Category: Homo sapiens]]
+[[Category: Large Structures]]
+[[Category: Dienemann C]]
+[[Category: Schmitzova J]]
+[[Category: Zhan Y]]