29mc: Difference between revisions

Line 1:

~~'''Unreleased structure'''~~

~~The entry~~ 29mc is ~~ON HOLD until Paper~~ Publication

==Structure of Anopheles gambiae OBP9 in complex with Methyl eugenol==

== Structural highlights ==

<table><tr><td colspan='2'>[[29mc]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Anopheles_gambiae Anopheles gambiae]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=29MC OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=29MC FirstGlance]. <br>

</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 1.2Å</td></tr>

<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=A1J27:1,2-dimethoxy-4-prop-2-enyl-benzene'>A1J27</scene>, <scene name='pdbligand=PG4:TETRAETHYLENE+GLYCOL'>PG4</scene></td></tr>

<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=29mc FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=29mc OCA], [https://pdbe.org/29mc PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=29mc RCSB], [https://www.ebi.ac.uk/pdbsum/29mc PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=29mc ProSAT]</span></td></tr>

</table>

== Function ==

[https://www.uniprot.org/uniprot/Q8I8R2_ANOGA Q8I8R2_ANOGA] Present in the aqueous fluid surrounding olfactory sensory dendrites and are thought to aid in the capture and transport of hydrophobic odorants into and through this fluid.[ARBA:ARBA00002735]

== Publication Abstract from PubMed ==

Odorant-binding proteins (OBPs) in mosquitoes play central roles in chemosensory perception and are attractive targets for vector control strategies. However, some OBPs are also expressed in non-olfactory tissues, suggesting a pleiotropic function that has not been sufficiently investigated. The crystal structures of the pleiotropic AgamOBP9 of the Anopheles gambiae mosquito were determined in complex with three plant-derived bioactive molecules: the phenylpropanoids n-butyl cinnamate and methyl eugenol (ME), as well as the monoterpene p-menthane-3, 8-diol (PMD). Fluorescence competitive binding assays and binding free-energy calculations identified that n-butyl cinnamate and ME bind with Ki values in the micromolar range, in contrast to the weak affinity observed for PMD. Structural analysis revealed an extended internal cavity comprising two distinct ligand-binding regions. One region, located at the bottom of the cavity, accommodated all investigated ligands without undergoing significant conformational changes, suggesting a structurally preordered binding pocket. The second region, situated at the cavity entrance, binds MPD and PEG, both used as crystallization agents, and may therefore serve as a recognition site for molecules with diverse chemical features. In the AgamOBP9-butyl cinnamate-MPD complex, MPD binding to the entrance-site induces rearrangements of surrounding residues, including Arg8, Arg15, Tyr32, Lys33, and Trp35. These interactions appear to promote the convergence of helices alpha1, alpha2, and the alpha2-alpha3 connecting loop toward a more "closed" protein conformation. The conformational flexibility of AgamOBP9 at the entrance region was further supported by differential scanning calorimetry and molecular dynamics simulations, which suggested the presence of two independent thermodynamic domains within the protein. Structural superposition with the homologous AaegOBP22-linoleic acid complex indicated that the AgamOBP9 cavity could accommodate fatty acids or other long-chain molecules spanning both binding regions, implying potential functions beyond conventional olfactory signaling. These findings provide new insights into the molecular basis of ligand recognition by AgamOBP9, which may guide the discovery of novel OBP9-targeting ligands.

~~Authors~~:

Structural insights into ligand recognition by the pleiotropic odorant-binding protein AgamOBP9.,Christodoulou E, Stamati ECV, Saitta F, Papakyriakou A, Fessas D, Tsitsanou KE, Zographos SE Int J Biol Macromol. 2026 Jun 12;372:153025. doi: 10.1016/j.ijbiomac.2026.153025. PMID:42285453<ref>PMID:42285453</ref>

~~Description~~:

From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.<br>

[[Category: ~~Unreleased~~ Structures]]

</div>

== References ==

__TOC__

</StructureSection>

[[Category: Anopheles gambiae]]

[[Category: Large Structures]]

[[Category: Christodoulou E]]

[[Category: Stamati ECV]]

[[Category: Tsitsanou KE]]

[[Category: Zographos SE]]

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@@ Line 1: / Line 1: @@
-'''Unreleased structure'''
-The entry 29mc is ON HOLD  until Paper Publication
+==Structure of Anopheles gambiae OBP9 in complex with Methyl eugenol==
+<StructureSection load='29mc' size='340' side='right'caption='[[29mc]], [[Resolution|resolution]] 1.20&Aring;' scene=''>
+== Structural highlights ==
+<table><tr><td colspan='2'>[[29mc]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Anopheles_gambiae Anopheles gambiae]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=29MC OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=29MC FirstGlance]. <br>
+</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 1.2&#8491;</td></tr>
+<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=A1J27:1,2-dimethoxy-4-prop-2-enyl-benzene'>A1J27</scene>, <scene name='pdbligand=PG4:TETRAETHYLENE+GLYCOL'>PG4</scene></td></tr>
+<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=29mc FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=29mc OCA], [https://pdbe.org/29mc PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=29mc RCSB], [https://www.ebi.ac.uk/pdbsum/29mc PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=29mc ProSAT]</span></td></tr>
+</table>
+== Function ==
+[https://www.uniprot.org/uniprot/Q8I8R2_ANOGA Q8I8R2_ANOGA] Present in the aqueous fluid surrounding olfactory sensory dendrites and are thought to aid in the capture and transport of hydrophobic odorants into and through this fluid.[ARBA:ARBA00002735]
+<div style="background-color:#fffaf0;">
+== Publication Abstract from PubMed ==
+Odorant-binding proteins (OBPs) in mosquitoes play central roles in chemosensory perception and are attractive targets for vector control strategies. However, some OBPs are also expressed in non-olfactory tissues, suggesting a pleiotropic function that has not been sufficiently investigated. The crystal structures of the pleiotropic AgamOBP9 of the Anopheles gambiae mosquito were determined in complex with three plant-derived bioactive molecules: the phenylpropanoids n-butyl cinnamate and methyl eugenol (ME), as well as the monoterpene p-menthane-3, 8-diol (PMD). Fluorescence competitive binding assays and binding free-energy calculations identified that n-butyl cinnamate and ME bind with Ki values in the micromolar range, in contrast to the weak affinity observed for PMD. Structural analysis revealed an extended internal cavity comprising two distinct ligand-binding regions. One region, located at the bottom of the cavity, accommodated all investigated ligands without undergoing significant conformational changes, suggesting a structurally preordered binding pocket. The second region, situated at the cavity entrance, binds MPD and PEG, both used as crystallization agents, and may therefore serve as a recognition site for molecules with diverse chemical features. In the AgamOBP9-butyl cinnamate-MPD complex, MPD binding to the entrance-site induces rearrangements of surrounding residues, including Arg8, Arg15, Tyr32, Lys33, and Trp35. These interactions appear to promote the convergence of helices alpha1, alpha2, and the alpha2-alpha3 connecting loop toward a more "closed" protein conformation. The conformational flexibility of AgamOBP9 at the entrance region was further supported by differential scanning calorimetry and molecular dynamics simulations, which suggested the presence of two independent thermodynamic domains within the protein. Structural superposition with the homologous AaegOBP22-linoleic acid complex indicated that the AgamOBP9 cavity could accommodate fatty acids or other long-chain molecules spanning both binding regions, implying potential functions beyond conventional olfactory signaling. These findings provide new insights into the molecular basis of ligand recognition by AgamOBP9, which may guide the discovery of novel OBP9-targeting ligands.
-Authors:
+Structural insights into ligand recognition by the pleiotropic odorant-binding protein AgamOBP9.,Christodoulou E, Stamati ECV, Saitta F, Papakyriakou A, Fessas D, Tsitsanou KE, Zographos SE Int J Biol Macromol. 2026 Jun 12;372:153025. doi: 10.1016/j.ijbiomac.2026.153025. PMID:42285453<ref>PMID:42285453</ref>
-Description:
+From MEDLINE&reg;/PubMed&reg;, a database of the U.S. National Library of Medicine.<br>
-[[Category: Unreleased Structures]]
+</div>
+<div class="pdbe-citations 29mc" style="background-color:#fffaf0;"></div>
+== References ==
+<references/>
+__TOC__
+</StructureSection>
+[[Category: Anopheles gambiae]]
+[[Category: Large Structures]]
+[[Category: Christodoulou E]]
+[[Category: Stamati ECV]]
+[[Category: Tsitsanou KE]]
+[[Category: Zographos SE]]