Hydrogen in macromolecular models: Difference between revisions
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**Enter your PDB ID or upload a coordinate file. | **Enter your PDB ID or upload a coordinate file. | ||
**After the results appear, click on the pdb link to receive the coordinate file containing added hydrogens. | **After the results appear, click on the pdb link to receive the coordinate file containing added hydrogens. | ||
* Use the free [[Jmol/Application|Jmol Application]]. Enter these commands in the white ''Jmol Script Console'' window: | |||
** set pdbAddHydrogens true | |||
**[[https://proteopedia.org/w/Jmol/Application#Loading_a_Molecule|Load the molecule]] (must be done AFTER the previous command). | |||
** select all (only the selected atoms will be written) | |||
** write hadded.pdb ("hadded" can be your filename, but must end ".pdb") | |||
[[PDB files]] that you save from either of these methods, can, for example, be uploaded for visualization in [[FirstGlance in Jmol]]. | [[PDB files]] that you save from either of these methods, can, for example, be uploaded for visualization in [[FirstGlance in Jmol]]. | ||
