2bj3: Difference between revisions

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[[Image:2bj3.gif|left|200px]]
{{Seed}}
[[Image:2bj3.png|left|200px]]


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{{STRUCTURE_2bj3|  PDB=2bj3  |  SCENE=  }}  
{{STRUCTURE_2bj3|  PDB=2bj3  |  SCENE=  }}  


'''NIKR-APO'''
===NIKR-APO===




==Overview==
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The Pyrococcus horikoshii OT3 genome contains a gene (PH0601 or nikR) encoding a protein (PhNikR) that shares 33.8% amino acid sequence identity with Escherichia coli nickel responsive repressor NikR (EcNikR), including many residues that are functionally important in the E.coli ortholog. We succeeded in crystallization and structural characterization of PhNikR in the apo form and two nickel bound forms that exhibit different conformations, open and closed. Moreover, we have identified a putative "low-affinity" nickel-binding pocket in the closed form. This binding site has unusual nickel coordination and exhibits high sensitivity to phosphate in the crystal structure. Analysis of the PhNikR structures and structure-based mutational studies with EcNikR reveals a plausible mechanism of nickel-dependent promoter recognition by the NikR family of proteins.
The line below this paragraph, {{ABSTRACT_PUBMED_15826657}}, adds the Publication Abstract to the page
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{{ABSTRACT_PUBMED_15826657}}


==About this Structure==
==About this Structure==
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[[Category: Structural genomic]]
[[Category: Structural genomic]]
[[Category: Transcription]]
[[Category: Transcription]]
''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Sat May  3 20:21:36 2008''
 
''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Mon Jul 28 17:42:54 2008''

Revision as of 14:42, 28 July 2008

File:2bj3.png

Template:STRUCTURE 2bj3

NIKR-APO

Template:ABSTRACT PUBMED 15826657

About this Structure

2BJ3 is a Single protein structure of sequence from Pyrococcus horikoshii. Full crystallographic information is available from OCA.

Reference

Structure of Pyrococcus horikoshii NikR: nickel sensing and implications for the regulation of DNA recognition., Chivers PT, Tahirov TH, J Mol Biol. 2005 May 6;348(3):597-607. PMID:15826657

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