2ji7: Difference between revisions

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[[Image:2ji7.jpg|left|200px]]
{{Seed}}
[[Image:2ji7.png|left|200px]]


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{{STRUCTURE_2ji7|  PDB=2ji7  |  SCENE=  }}  
{{STRUCTURE_2ji7|  PDB=2ji7  |  SCENE=  }}  


'''X-RAY STRUCTURE OF OXALYL-COA DECARBOXYLASE WITH COVALENT REACTION INTERMEDIATE'''
===X-RAY STRUCTURE OF OXALYL-COA DECARBOXYLASE WITH COVALENT REACTION INTERMEDIATE===




==Overview==
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Despite more than five decades of extensive studies of thiamin diphosphate (ThDP) enzymes, there remain many uncertainties as to how these enzymes achieve their rate enhancements. Here, we present a clear picture of catalysis for the simple nonoxidative decarboxylase, oxalyl-coenzyme A (CoA) decarboxylase, based on crystallographic snapshots along the catalytic cycle and kinetic data on active site mutants. First, we provide crystallographic evidence that, upon binding of oxalyl-CoA, the C-terminal 13 residues fold over the substrate, aligning the substrate alpha-carbon for attack by the ThDP-C2 atom. The second structure presented shows a covalent reaction intermediate after decarboxylation, interpreted as being nonplanar. Finally, the structure of a product complex is presented. In accordance with mutagenesis data, no side chains of the enzyme are implied to directly participate in proton transfer except the glutamic acid (Glu-56), which promotes formation of the 1',4'-iminopyrimidine tautomer of ThDP needed for activation.
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{{ABSTRACT_PUBMED_17637344}}


==About this Structure==
==About this Structure==
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[[Category: Thiamin diphosphate-dependent]]
[[Category: Thiamin diphosphate-dependent]]
[[Category: Thiamine pyrophosphate]]
[[Category: Thiamine pyrophosphate]]
''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Sun May  4 08:57:17 2008''
 
''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Sun Jul 27 23:27:40 2008''

Revision as of 20:27, 27 July 2008

File:2ji7.png

Template:STRUCTURE 2ji7

X-RAY STRUCTURE OF OXALYL-COA DECARBOXYLASE WITH COVALENT REACTION INTERMEDIATE

Template:ABSTRACT PUBMED 17637344

About this Structure

2JI7 is a Single protein structure of sequence from Oxalobacter formigenes. Full crystallographic information is available from OCA.

Reference

Crystallographic snapshots of oxalyl-CoA decarboxylase give insights into catalysis by nonoxidative ThDP-dependent decarboxylases., Berthold CL, Toyota CG, Moussatche P, Wood MD, Leeper F, Richards NG, Lindqvist Y, Structure. 2007 Jul;15(7):853-61. PMID:17637344

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