2q6w: Difference between revisions

From Proteopedia
Jump to navigationJump to search
← Older editNewer edit →
OCA (talk | contribs)
Bots, Bureaucrats, journal, Administrators
3,332,843 edits
No edit summary
OCA (talk | contribs)
Bots, Bureaucrats, journal, Administrators
3,332,843 edits
No edit summary
Line 1: Line 1:
[[Image:2q6w.gif|left|200px]]
{{Seed}}
[[Image:2q6w.png|left|200px]]


<!--
<!--
Line 9: Line 10:
{{STRUCTURE_2q6w|  PDB=2q6w  |  SCENE=  }}  
{{STRUCTURE_2q6w|  PDB=2q6w  |  SCENE=  }}  


'''The structure of HLA-DRA, DRB3*0101 (DR52a) with bound platelet integrin peptide associated with fetal and neonatal alloimmune thrombocytopenia'''
===The structure of HLA-DRA, DRB3*0101 (DR52a) with bound platelet integrin peptide associated with fetal and neonatal alloimmune thrombocytopenia===




==Overview==
<!--  
We describe structural studies of the human leukocyte antigen DR52a, HLA-DRA/DRB3*0101, in complex with an N-terminal human platelet integrin alphaII(B)betaIII glycoprotein peptide which contains a Leu/Pro dimorphism. The 33:Leu dimorphism is the epitope for the T cell directed response in neonatal alloimmune thrombocytopenia and post-transfusion purpura in individuals with the alphaII(B)betaIII 33:Pro allele, and defines the unidirectional alloimmune response. This condition is always associated with DR52a. The crystallographic structure has been refined to 2.25 A. There are two alphabeta heterodimers to the asymmetric unit in space group P4(1)2(1)2. The molecule is characterized by two prominent hydrophobic pockets at either end of the peptide binding cleft and a deep, narrower and highly charged P4 opening underneath the beta 1 chain. Further, the peptide in the second molecule displays a sharp upward turn after pocket P9. The structure reveals the role of pockets and the distinctive basic P4 pocket, shared by DR52a and DR3, in selecting their respective binding peptide repertoire. We observe an interesting switch in a residue from the canonically assigned pocket 6 seen in prior class II structures to pocket 4. This occludes the P6 pocket helping to explain the distinctive "1-4-9" peptide binding motif. A beta57 Asp--&gt;Val substitution abrogates the salt-bridge to alpha76 Arg and along with a hydrophobic beta37 is important in shaping the P9 pocket. DRB3*0101 and DRB1*0301 belong to an ancestral haplotype and are associated with many autoimmune diseases linked to antigen presentation, but whereas DR3 is susceptible to type 1 diabetes DR52a is not. This dichotomy is explored for clues to the disease.
The line below this paragraph, {{ABSTRACT_PUBMED_17583734}}, adds the Publication Abstract to the page
(as it appears on PubMed at http://www.pubmed.gov), where 17583734 is the PubMed ID number.
-->
{{ABSTRACT_PUBMED_17583734}}


==About this Structure==
==About this Structure==
Line 30: Line 34:
[[Category: Peptide-class ii mhc complex]]
[[Category: Peptide-class ii mhc complex]]
[[Category: Thrombocytopenia purpura]]
[[Category: Thrombocytopenia purpura]]
''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Sun May  4 14:27:37 2008''
 
''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Sun Jul 27 18:20:28 2008''

Revision as of 15:20, 27 July 2008

File:2q6w.png

Template:STRUCTURE 2q6w

The structure of HLA-DRA, DRB3*0101 (DR52a) with bound platelet integrin peptide associated with fetal and neonatal alloimmune thrombocytopenia

Template:ABSTRACT PUBMED 17583734

About this Structure

2Q6W is a Protein complex structure of sequences from Homo sapiens. Full crystallographic information is available from OCA.

Reference

Crystallographic structure of the human leukocyte antigen DRA, DRB3*0101: models of a directional alloimmune response and autoimmunity., Parry CS, Gorski J, Stern LJ, J Mol Biol. 2007 Aug 10;371(2):435-46. Epub 2007 May 18. PMID:17583734

Page seeded by OCA on Sun Jul 27 18:20:28 2008

Proteopedia Page Contributors and Editors (what is this?)

OCA

Retrieved from "https://proteopedia.org/index.php?title=2q6w&oldid=660331"