NMR Ensembles of Models: Difference between revisions

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Ligands ([[Hetero atoms]]) are also shown for all models, except that they are opaque only for model 1, and translucent for all other models. Ligand atoms are colored by element, using the [[CPK color scheme]]. Examples with hetero groups covalently linked to chain termini, with extremely variable positions, are [[1jsa]] and [[1dqc]]. [[1bah]] also has hetero groups in variable positions.

'''Ligands''' ([[Hetero atoms]]) are also shown for all models, except that they are opaque only for model 1, and translucent for all other models. Ligand atoms are colored by element, using the [[CPK color scheme]]. Examples with hetero groups covalently linked to chain termini, with extremely variable positions, are [[1jsa]] and [[1dqc]]. [[1bah]] also has hetero groups in variable positions. [[1hpn]] has only hetero atoms.

The example at right shows the 3 models for [[1lcd]], a lac repressor domain bound to DNA, with one sodium ion. Water is present in this model, but for clarity, Proteopedia does not show water in its initial scene. <scene name='NMR_Ensembles_of_Models/Water/1'>Show water</scene>. (To hide water, click the ''initial scene'' green link just below the molecule.)

The example at right shows the 3 models for [[1lcd]], a lac repressor domain bound to DNA, with one sodium ion. '''Water''' is present in this model, but for clarity, Proteopedia does not show water in its initial scene. <scene name='NMR_Ensembles_of_Models/Water/1'>Show water</scene>. (To hide water, click the ''initial scene'' green link just below the molecule.)

Disulfide bonds are shown as yellow rods connecting backbones~~, for example in [[1iw4]]~~, with the first model opaque, and all other models translucent.

'''Disulfide bonds''' are shown as yellow rods connecting backbones, with the first model opaque, and all other models translucent. An example is [[1iw4]].

===Individual Models===

NMR Ensembles of Models: Difference between revisions

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@@ Line 19: / Line 19: @@
 {{ColorKey N2CRainbow}}
-Ligands ([[Hetero atoms]]) are also shown for all models, except that they are opaque only for model 1, and translucent for all other models. Ligand atoms are colored by element, using the [[CPK color scheme]]. Examples with hetero groups covalently linked to chain termini, with extremely variable positions, are [[1jsa]] and [[1dqc]]. [[1bah]] also has hetero groups in variable positions.
+'''Ligands''' ([[Hetero atoms]]) are also shown for all models, except that they are opaque only for model 1, and translucent for all other models. Ligand atoms are colored by element, using the [[CPK color scheme]]. Examples with hetero groups covalently linked to chain termini, with extremely variable positions, are [[1jsa]] and [[1dqc]]. [[1bah]] also has hetero groups in variable positions. [[1hpn]] has only hetero atoms.
-The example at right shows the 3 models for [[1lcd]], a lac repressor domain bound to DNA, with one sodium ion. Water is present in this model, but for clarity, Proteopedia does not show water in its initial scene. <scene name='NMR_Ensembles_of_Models/Water/1'>Show water</scene>. (To hide water, click the ''initial scene'' green link just below the molecule.)
+The example at right shows the 3 models for [[1lcd]], a lac repressor domain bound to DNA, with one sodium ion. '''Water''' is present in this model, but for clarity, Proteopedia does not show water in its initial scene. <scene name='NMR_Ensembles_of_Models/Water/1'>Show water</scene>. (To hide water, click the ''initial scene'' green link just below the molecule.)
-Disulfide bonds are shown as yellow rods connecting backbones, for example in [[1iw4]], with the first model opaque, and all other models translucent.
+'''Disulfide bonds''' are shown as yellow rods connecting backbones, with the first model opaque, and all other models translucent. An example is [[1iw4]].
 ===Individual Models===