1rm0: Difference between revisions

From Proteopedia
Jump to navigationJump to search
OCA (talk | contribs)
New page: left|200px<br /><applet load="1rm0" size="450" color="white" frame="true" align="right" spinBox="true" caption="1rm0, resolution 2.05Å" /> '''Crystal Structure of...
 
OCA (talk | contribs)
No edit summary
Line 1: Line 1:
[[Image:1rm0.gif|left|200px]]<br /><applet load="1rm0" size="450" color="white" frame="true" align="right" spinBox="true"  
[[Image:1rm0.gif|left|200px]]<br /><applet load="1rm0" size="350" color="white" frame="true" align="right" spinBox="true"  
caption="1rm0, resolution 2.05&Aring;" />
caption="1rm0, resolution 2.05&Aring;" />
'''Crystal Structure of Myo-Inositol 1-Phosphate Synthase From Saccharomyces cerevisiae In Complex With NAD+ and 2-deoxy-D-glucitol 6-(E)-vinylhomophosphonate'''<br />
'''Crystal Structure of Myo-Inositol 1-Phosphate Synthase From Saccharomyces cerevisiae In Complex With NAD+ and 2-deoxy-D-glucitol 6-(E)-vinylhomophosphonate'''<br />


==Overview==
==Overview==
1l-myo-inositol 1-phosphate (MIP) synthase catalyzes the conversion of, d-glucose 6-phosphate to 1l-myo-inositol 1-phosphate, the first and, rate-limiting step in the biosynthesis of all inositol-containing, compounds. It involves an oxidation, enolization, intramolecular aldol, cyclization, and reduction. Here we present the structure of MIP synthase, in complex with NAD(+) and a high-affinity inhibitor, 2-deoxy-d-glucitol, 6-(E)-vinylhomophosphonate. This structure reveals interactions between, the enzyme active site residues and the inhibitor that are significantly, different from that proposed for 2-deoxy-d-glucitol 6-phosphate in the, previously published structure of MIP synthase-NAD(+)-2-deoxy-d-glucitol, 6-phosphate. There are several other conformational changes in NAD(+) and, the enzyme active site as well. Based on the new structural data, we, propose a new and completely different mechanism for MIP synthase.
1l-myo-inositol 1-phosphate (MIP) synthase catalyzes the conversion of d-glucose 6-phosphate to 1l-myo-inositol 1-phosphate, the first and rate-limiting step in the biosynthesis of all inositol-containing compounds. It involves an oxidation, enolization, intramolecular aldol cyclization, and reduction. Here we present the structure of MIP synthase in complex with NAD(+) and a high-affinity inhibitor, 2-deoxy-d-glucitol 6-(E)-vinylhomophosphonate. This structure reveals interactions between the enzyme active site residues and the inhibitor that are significantly different from that proposed for 2-deoxy-d-glucitol 6-phosphate in the previously published structure of MIP synthase-NAD(+)-2-deoxy-d-glucitol 6-phosphate. There are several other conformational changes in NAD(+) and the enzyme active site as well. Based on the new structural data, we propose a new and completely different mechanism for MIP synthase.


==About this Structure==
==About this Structure==
1RM0 is a [http://en.wikipedia.org/wiki/Single_protein Single protein] structure of sequence from [http://en.wikipedia.org/wiki/Saccharomyces_cerevisiae Saccharomyces cerevisiae] with MN, D6P and NAI as [http://en.wikipedia.org/wiki/ligands ligands]. Active as [http://en.wikipedia.org/wiki/Inositol-3-phosphate_synthase Inositol-3-phosphate synthase], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=5.5.1.4 5.5.1.4] Full crystallographic information is available from [http://ispc.weizmann.ac.il/oca-bin/ocashort?id=1RM0 OCA].  
1RM0 is a [http://en.wikipedia.org/wiki/Single_protein Single protein] structure of sequence from [http://en.wikipedia.org/wiki/Saccharomyces_cerevisiae Saccharomyces cerevisiae] with <scene name='pdbligand=MN:'>MN</scene>, <scene name='pdbligand=D6P:'>D6P</scene> and <scene name='pdbligand=NAI:'>NAI</scene> as [http://en.wikipedia.org/wiki/ligands ligands]. Active as [http://en.wikipedia.org/wiki/Inositol-3-phosphate_synthase Inositol-3-phosphate synthase], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=5.5.1.4 5.5.1.4] Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1RM0 OCA].  


==Reference==
==Reference==
Line 14: Line 14:
[[Category: Saccharomyces cerevisiae]]
[[Category: Saccharomyces cerevisiae]]
[[Category: Single protein]]
[[Category: Single protein]]
[[Category: Foley, K.M.]]
[[Category: Foley, K M.]]
[[Category: Geiger, J.H.]]
[[Category: Geiger, J H.]]
[[Category: Jin, X.]]
[[Category: Jin, X.]]
[[Category: D6P]]
[[Category: D6P]]
Line 22: Line 22:
[[Category: myo-inositol 1-phosphate synthase]]
[[Category: myo-inositol 1-phosphate synthase]]


''Page seeded by [http://ispc.weizmann.ac.il/oca OCA ] on Wed Nov 21 01:42:09 2007''
''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Thu Feb 21 14:52:20 2008''