1s97: Difference between revisions
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New page: left|200px<br /><applet load="1s97" size="450" color="white" frame="true" align="right" spinBox="true" caption="1s97, resolution 2.40Å" /> '''DPO4 with GT mismatc... |
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[[Image:1s97.gif|left|200px]]<br /><applet load="1s97" size=" | [[Image:1s97.gif|left|200px]]<br /><applet load="1s97" size="350" color="white" frame="true" align="right" spinBox="true" | ||
caption="1s97, resolution 2.40Å" /> | caption="1s97, resolution 2.40Å" /> | ||
'''DPO4 with GT mismatch'''<br /> | '''DPO4 with GT mismatch'''<br /> | ||
==Overview== | ==Overview== | ||
The ability or inability of a DNA polymerase to extend a mispair directly | The ability or inability of a DNA polymerase to extend a mispair directly affects the establishment of genomic mutations. We report here kinetic analyses of the ability of Dpo4, a Y-family polymerase from Sulfolobus solfataricus, to extend from all mispairs opposite a template G or T. Dpo4 is equally inefficient at extending these mispairs, which include, surprisingly, a G.T mispair expected to conform closely to Watson-Crick geometry. To elucidate the basis of this, we solved the structure of Dpo4 bound to G.T-mispaired primer template in the presence of an incoming nucleotide. As a control, we also determined the structure of Dpo4 bound to a matched A-T base pair at the primer terminus. The structures offer a basis for the low efficiency of Dpo4 in extending a G.T mispair: a reverse wobble that deflects the primer 3'-OH away from the incoming nucleotide. | ||
==About this Structure== | ==About this Structure== | ||
1S97 is a [http://en.wikipedia.org/wiki/Single_protein Single protein] structure of sequence from [http://en.wikipedia.org/wiki/Sulfolobus_solfataricus Sulfolobus solfataricus] with CA and DCT as [http://en.wikipedia.org/wiki/ligands ligands]. Active as [http://en.wikipedia.org/wiki/DNA-directed_DNA_polymerase DNA-directed DNA polymerase], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=2.7.7.7 2.7.7.7] Full crystallographic information is available from [http:// | 1S97 is a [http://en.wikipedia.org/wiki/Single_protein Single protein] structure of sequence from [http://en.wikipedia.org/wiki/Sulfolobus_solfataricus Sulfolobus solfataricus] with <scene name='pdbligand=CA:'>CA</scene> and <scene name='pdbligand=DCT:'>DCT</scene> as [http://en.wikipedia.org/wiki/ligands ligands]. Active as [http://en.wikipedia.org/wiki/DNA-directed_DNA_polymerase DNA-directed DNA polymerase], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=2.7.7.7 2.7.7.7] Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1S97 OCA]. | ||
==Reference== | ==Reference== | ||
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[[Category: Single protein]] | [[Category: Single protein]] | ||
[[Category: Sulfolobus solfataricus]] | [[Category: Sulfolobus solfataricus]] | ||
[[Category: Aggarwal, A | [[Category: Aggarwal, A K.]] | ||
[[Category: Escalante, C | [[Category: Escalante, C R.]] | ||
[[Category: Johnson, R | [[Category: Johnson, R E.]] | ||
[[Category: Prakash, L.]] | [[Category: Prakash, L.]] | ||
[[Category: Prakash, S.]] | [[Category: Prakash, S.]] | ||
[[Category: Trincao, J.]] | [[Category: Trincao, J.]] | ||
[[Category: Wolfle, W | [[Category: Wolfle, W T.]] | ||
[[Category: CA]] | [[Category: CA]] | ||
[[Category: DCT]] | [[Category: DCT]] | ||
[[Category: dna duplex]] | [[Category: dna duplex]] | ||
[[Category: g | [[Category: g t mismatch]] | ||
[[Category: protein-dna complex]] | [[Category: protein-dna complex]] | ||
''Page seeded by [http:// | ''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Thu Feb 21 14:59:08 2008'' | ||
