1st7: Difference between revisions

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[[Image:1st7.gif|left|200px]]<br /><applet load="1st7" size="~~450~~" color="white" frame="true" align="right" spinBox="true"

[[Image:1st7.gif|left|200px]]<br /><applet load="1st7" size="350" color="white" frame="true" align="right" spinBox="true"

caption="1st7" />

'''Solution structure of Acyl Coenzyme A Binding Protein from yeast'''<br />

==Overview==

Comparison of the folding processes for homologue proteins can provide, valuable information about details in the interactions leading to the, formation of the folding transition state. Here the folding kinetics of 18, variants of yACBP and 3 variants of bACBP have been studied by Phi-value, analysis. In combination with Phi-values from previous work, detailed, insight into the transition states for folding of both yACBP and bACBP has, been obtained. Of the 16 sequence positions that have been studied in both, yACBP and bACBP, 5 (V12, I/L27, Y73, V77, and L80) have high Phi-values, and appear to be important for the transition state formation in both, homologues. Y31, A34, and A69 have high Phi-values only in yACBP, while, F5, A9, and I74 have high Phi-values only in bACBP. Thus, additional, interactions between helices A2 and A4 appear to be important for the, transition state of yACBP, whereas additional interactions between helices, A1 and A4 appear to be important for the transition state of bACBP. To, examine whether these differences could be assigned to different packing, of the residues in the native state, a solution structure of yACBP was, determined by NMR. Small changes in the packing of the hydrophobic, side-chains, which strengthen the interactions between helices A2 and A4, are observed in yACBP relative to bACBP. It is suggested that different, structure elements serve as scaffolds for the folding of the 2 ACBP, homologues.

Comparison of the folding processes for homologue proteins can provide valuable information about details in the interactions leading to the formation of the folding transition state. Here the folding kinetics of 18 variants of yACBP and 3 variants of bACBP have been studied by Phi-value analysis. In combination with Phi-values from previous work, detailed insight into the transition states for folding of both yACBP and bACBP has been obtained. Of the 16 sequence positions that have been studied in both yACBP and bACBP, 5 (V12, I/L27, Y73, V77, and L80) have high Phi-values and appear to be important for the transition state formation in both homologues. Y31, A34, and A69 have high Phi-values only in yACBP, while F5, A9, and I74 have high Phi-values only in bACBP. Thus, additional interactions between helices A2 and A4 appear to be important for the transition state of yACBP, whereas additional interactions between helices A1 and A4 appear to be important for the transition state of bACBP. To examine whether these differences could be assigned to different packing of the residues in the native state, a solution structure of yACBP was determined by NMR. Small changes in the packing of the hydrophobic side-chains, which strengthen the interactions between helices A2 and A4, are observed in yACBP relative to bACBP. It is suggested that different structure elements serve as scaffolds for the folding of the 2 ACBP homologues.

==About this Structure==

1ST7 is a [http://en.wikipedia.org/wiki/Single_protein Single protein] structure of sequence from [http://en.wikipedia.org/wiki/Saccharomyces_cerevisiae Saccharomyces cerevisiae]. Full crystallographic information is available from [http://~~ispc~~.weizmann.ac.il/oca-bin/ocashort?id=1ST7 OCA].

1ST7 is a [http://en.wikipedia.org/wiki/Single_protein Single protein] structure of sequence from [http://en.wikipedia.org/wiki/Saccharomyces_cerevisiae Saccharomyces cerevisiae]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1ST7 OCA].

==Reference==

Line 13:

[[Category: Saccharomyces cerevisiae]]

[[Category: Single protein]]

[[Category: Caterer, N.R.]]

[[Category: Caterer, N R.]]

[[Category: Jensen, P.H.]]

[[Category: Jensen, P H.]]

[[Category: Knudsen, J.]]

[[Category: Kragelund, B.B.]]

[[Category: Kragelund, B B.]]

[[Category: Poulsen, F.M.]]

[[Category: Poulsen, F M.]]

[[Category: Poulsen, H.I.]]

[[Category: Poulsen, H I.]]

[[Category: Teilum, K.]]

[[Category: Thormann, T.]]

[[Category: four helix bundle]]

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''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Thu Feb 21 15:04:56 2008''

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@@ Line 1: / Line 1: @@
-[[Image:1st7.gif|left|200px]]<br /><applet load="1st7" size="450" color="white" frame="true" align="right" spinBox="true"
+[[Image:1st7.gif|left|200px]]<br /><applet load="1st7" size="350" color="white" frame="true" align="right" spinBox="true"
 caption="1st7" />
 '''Solution structure of Acyl Coenzyme A Binding Protein from yeast'''<br />
 ==Overview==
-Comparison of the folding processes for homologue proteins can provide, valuable information about details in the interactions leading to the, formation of the folding transition state. Here the folding kinetics of 18, variants of yACBP and 3 variants of bACBP have been studied by Phi-value, analysis. In combination with Phi-values from previous work, detailed, insight into the transition states for folding of both yACBP and bACBP has, been obtained. Of the 16 sequence positions that have been studied in both, yACBP and bACBP, 5 (V12, I/L27, Y73, V77, and L80) have high Phi-values, and appear to be important for the transition state formation in both, homologues. Y31, A34, and A69 have high Phi-values only in yACBP, while, F5, A9, and I74 have high Phi-values only in bACBP. Thus, additional, interactions between helices A2 and A4 appear to be important for the, transition state of yACBP, whereas additional interactions between helices, A1 and A4 appear to be important for the transition state of bACBP. To, examine whether these differences could be assigned to different packing, of the residues in the native state, a solution structure of yACBP was, determined by NMR. Small changes in the packing of the hydrophobic, side-chains, which strengthen the interactions between helices A2 and A4, are observed in yACBP relative to bACBP. It is suggested that different, structure elements serve as scaffolds for the folding of the 2 ACBP, homologues.
+Comparison of the folding processes for homologue proteins can provide valuable information about details in the interactions leading to the formation of the folding transition state. Here the folding kinetics of 18 variants of yACBP and 3 variants of bACBP have been studied by Phi-value analysis. In combination with Phi-values from previous work, detailed insight into the transition states for folding of both yACBP and bACBP has been obtained. Of the 16 sequence positions that have been studied in both yACBP and bACBP, 5 (V12, I/L27, Y73, V77, and L80) have high Phi-values and appear to be important for the transition state formation in both homologues. Y31, A34, and A69 have high Phi-values only in yACBP, while F5, A9, and I74 have high Phi-values only in bACBP. Thus, additional interactions between helices A2 and A4 appear to be important for the transition state of yACBP, whereas additional interactions between helices A1 and A4 appear to be important for the transition state of bACBP. To examine whether these differences could be assigned to different packing of the residues in the native state, a solution structure of yACBP was determined by NMR. Small changes in the packing of the hydrophobic side-chains, which strengthen the interactions between helices A2 and A4, are observed in yACBP relative to bACBP. It is suggested that different structure elements serve as scaffolds for the folding of the 2 ACBP homologues.
 ==About this Structure==
-ST7 is a [http://en.wikipedia.org/wiki/Single_protein Single protein] structure of sequence from [http://en.wikipedia.org/wiki/Saccharomyces_cerevisiae Saccharomyces cerevisiae]. Full crystallographic information is available from [http://ispc.weizmann.ac.il/oca-bin/ocashort?id=1ST7 OCA].
+ST7 is a [http://en.wikipedia.org/wiki/Single_protein Single protein] structure of sequence from [http://en.wikipedia.org/wiki/Saccharomyces_cerevisiae Saccharomyces cerevisiae]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1ST7 OCA].
 ==Reference==
@@ Line 13: / Line 13: @@
 [[Category: Saccharomyces cerevisiae]]
 [[Category: Single protein]]
-[[Category: Caterer, N.R.]]
+[[Category: Caterer, N R.]]
-[[Category: Jensen, P.H.]]
+[[Category: Jensen, P H.]]
 [[Category: Knudsen, J.]]
-[[Category: Kragelund, B.B.]]
+[[Category: Kragelund, B B.]]
-[[Category: Poulsen, F.M.]]
+[[Category: Poulsen, F M.]]
-[[Category: Poulsen, H.I.]]
+[[Category: Poulsen, H I.]]
 [[Category: Teilum, K.]]
 [[Category: Thormann, T.]]
 [[Category: four helix bundle]]
-''Page seeded by [http://ispc.weizmann.ac.il/oca OCA ] on Wed Nov 21 02:38:39 2007''
+''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Thu Feb 21 15:04:56 2008''