1tpf: Difference between revisions

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[[Image:1tpf.gif|left|200px]]<br /><applet load="1tpf" size="~~450~~" color="white" frame="true" align="right" spinBox="true"

[[Image:1tpf.gif|left|200px]]<br /><applet load="1tpf" size="350" color="white" frame="true" align="right" spinBox="true"

caption="1tpf, resolution 1.8Å" />

'''COMPARISON OF THE STRUCTURES AND THE CRYSTAL CONTACTS OF TRYPANOSOMAL TRIOSEPHOSPHATE ISOMERASE IN FOUR DIFFERENT CRYSTAL FORMS'''<br />

==Overview==

Triosephosphate isomerase (TIM) is a dimeric enzyme consisting of 2, identical subunits. Trypanosomal TIM can be crystallized in 4 different, spacegroups: P2(1)2(1)2(1), C2(big cell), C2(small cell), and P1. The P1, crystal form only grows in the presence of 1.4 M DMSO; there are 2 DMSO, binding sites per subunit. The structures have been refined at a, resolution of 1.83 A, 2.10 A, 2.13 A, and 1.80 A, respectively. In the 4, different spacegroups the TIM subunit can be observed in the context of 7, different crystallographic environments. In the C2 cells, the dimer 2-fold, axis coincides with a crystallographic 2-fold axis. The similarities and, differences of the 7 subunits are discussed. In 6 subunits the flexible, loop (loop 6) is open, whereas in the P2(1)2(1)2(1) cell, the flexible, loop of subunit 2 is in an almost closed conformation. The crystal, contacts in the 4 different crystal forms are predominantly generated by, polar residues in loops. A statistical analysis of the residues involved, in crystal contacts shows that, in particular, serines are frequently, involved in these interactions; 19% of the exposed serines are involved in, crystal contacts.

Triosephosphate isomerase (TIM) is a dimeric enzyme consisting of 2 identical subunits. Trypanosomal TIM can be crystallized in 4 different spacegroups: P2(1)2(1)2(1), C2(big cell), C2(small cell), and P1. The P1 crystal form only grows in the presence of 1.4 M DMSO; there are 2 DMSO binding sites per subunit. The structures have been refined at a resolution of 1.83 A, 2.10 A, 2.13 A, and 1.80 A, respectively. In the 4 different spacegroups the TIM subunit can be observed in the context of 7 different crystallographic environments. In the C2 cells, the dimer 2-fold axis coincides with a crystallographic 2-fold axis. The similarities and differences of the 7 subunits are discussed. In 6 subunits the flexible loop (loop 6) is open, whereas in the P2(1)2(1)2(1) cell, the flexible loop of subunit 2 is in an almost closed conformation. The crystal contacts in the 4 different crystal forms are predominantly generated by polar residues in loops. A statistical analysis of the residues involved in crystal contacts shows that, in particular, serines are frequently involved in these interactions; 19% of the exposed serines are involved in crystal contacts.

==About this Structure==

1TPF is a [http://en.wikipedia.org/wiki/Single_protein Single protein] structure of sequence from [http://en.wikipedia.org/wiki/Trypanosoma_brucei_brucei Trypanosoma brucei brucei] with DMS as [http://en.wikipedia.org/wiki/ligand ligand]. Active as [http://en.wikipedia.org/wiki/Triose-phosphate_isomerase Triose-phosphate isomerase], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=5.3.1.1 5.3.1.1] Full crystallographic information is available from [http://~~ispc~~.weizmann.ac.il/oca-bin/ocashort?id=1TPF OCA].

1TPF is a [http://en.wikipedia.org/wiki/Single_protein Single protein] structure of sequence from [http://en.wikipedia.org/wiki/Trypanosoma_brucei_brucei Trypanosoma brucei brucei] with <scene name='pdbligand=DMS:'>DMS</scene> as [http://en.wikipedia.org/wiki/ligand ligand]. Active as [http://en.wikipedia.org/wiki/Triose-phosphate_isomerase Triose-phosphate isomerase], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=5.3.1.1 5.3.1.1] Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1TPF OCA].

==Reference==

Line 14:

[[Category: Triose-phosphate isomerase]]

[[Category: Trypanosoma brucei brucei]]

[[Category: Kishan, K.V.Radha.]]

[[Category: Kishan, K V.Radha.]]

[[Category: Wierenga, R.K.]]

[[Category: Wierenga, R K.]]

[[Category: Zeelen, J.Ph.]]

[[Category: Zeelen, J Ph.]]

[[Category: DMS]]

[[Category: isomerase(intramolecular oxidoreductase)]]

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''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Thu Feb 21 15:16:00 2008''

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@@ Line 1: / Line 1: @@
-[[Image:1tpf.gif|left|200px]]<br /><applet load="1tpf" size="450" color="white" frame="true" align="right" spinBox="true"
+[[Image:1tpf.gif|left|200px]]<br /><applet load="1tpf" size="350" color="white" frame="true" align="right" spinBox="true"
 caption="1tpf, resolution 1.8&Aring;" />
 '''COMPARISON OF THE STRUCTURES AND THE CRYSTAL CONTACTS OF TRYPANOSOMAL TRIOSEPHOSPHATE ISOMERASE IN FOUR DIFFERENT CRYSTAL FORMS'''<br />
 ==Overview==
-Triosephosphate isomerase (TIM) is a dimeric enzyme consisting of 2, identical subunits. Trypanosomal TIM can be crystallized in 4 different, spacegroups: P2(1)2(1)2(1), C2(big cell), C2(small cell), and P1. The P1, crystal form only grows in the presence of 1.4 M DMSO; there are 2 DMSO, binding sites per subunit. The structures have been refined at a, resolution of 1.83 A, 2.10 A, 2.13 A, and 1.80 A, respectively. In the 4, different spacegroups the TIM subunit can be observed in the context of 7, different crystallographic environments. In the C2 cells, the dimer 2-fold, axis coincides with a crystallographic 2-fold axis. The similarities and, differences of the 7 subunits are discussed. In 6 subunits the flexible, loop (loop 6) is open, whereas in the P2(1)2(1)2(1) cell, the flexible, loop of subunit 2 is in an almost closed conformation. The crystal, contacts in the 4 different crystal forms are predominantly generated by, polar residues in loops. A statistical analysis of the residues involved, in crystal contacts shows that, in particular, serines are frequently, involved in these interactions; 19% of the exposed serines are involved in, crystal contacts.
+Triosephosphate isomerase (TIM) is a dimeric enzyme consisting of 2 identical subunits. Trypanosomal TIM can be crystallized in 4 different spacegroups: P2(1)2(1)2(1), C2(big cell), C2(small cell), and P1. The P1 crystal form only grows in the presence of 1.4 M DMSO; there are 2 DMSO binding sites per subunit. The structures have been refined at a resolution of 1.83 A, 2.10 A, 2.13 A, and 1.80 A, respectively. In the 4 different spacegroups the TIM subunit can be observed in the context of 7 different crystallographic environments. In the C2 cells, the dimer 2-fold axis coincides with a crystallographic 2-fold axis. The similarities and differences of the 7 subunits are discussed. In 6 subunits the flexible loop (loop 6) is open, whereas in the P2(1)2(1)2(1) cell, the flexible loop of subunit 2 is in an almost closed conformation. The crystal contacts in the 4 different crystal forms are predominantly generated by polar residues in loops. A statistical analysis of the residues involved in crystal contacts shows that, in particular, serines are frequently involved in these interactions; 19% of the exposed serines are involved in crystal contacts.
 ==About this Structure==
-TPF is a [http://en.wikipedia.org/wiki/Single_protein Single protein] structure of sequence from [http://en.wikipedia.org/wiki/Trypanosoma_brucei_brucei Trypanosoma brucei brucei] with DMS as [http://en.wikipedia.org/wiki/ligand ligand]. Active as [http://en.wikipedia.org/wiki/Triose-phosphate_isomerase Triose-phosphate isomerase], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=5.3.1.1 5.3.1.1] Full crystallographic information is available from [http://ispc.weizmann.ac.il/oca-bin/ocashort?id=1TPF OCA].
+TPF is a [http://en.wikipedia.org/wiki/Single_protein Single protein] structure of sequence from [http://en.wikipedia.org/wiki/Trypanosoma_brucei_brucei Trypanosoma brucei brucei] with <scene name='pdbligand=DMS:'>DMS</scene> as [http://en.wikipedia.org/wiki/ligand ligand]. Active as [http://en.wikipedia.org/wiki/Triose-phosphate_isomerase Triose-phosphate isomerase], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=5.3.1.1 5.3.1.1] Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1TPF OCA].
 ==Reference==
@@ Line 14: / Line 14: @@
 [[Category: Triose-phosphate isomerase]]
 [[Category: Trypanosoma brucei brucei]]
-[[Category: Kishan, K.V.Radha.]]
+[[Category: Kishan, K V.Radha.]]
-[[Category: Wierenga, R.K.]]
+[[Category: Wierenga, R K.]]
-[[Category: Zeelen, J.Ph.]]
+[[Category: Zeelen, J Ph.]]
 [[Category: DMS]]
 [[Category: isomerase(intramolecular oxidoreductase)]]
-''Page seeded by [http://ispc.weizmann.ac.il/oca OCA ] on Wed Nov 21 03:29:13 2007''
+''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Thu Feb 21 15:16:00 2008''