2b96: Difference between revisions

From Proteopedia
Jump to navigationJump to search
OCA (talk | contribs)
New page: left|200px<br /><applet load="2b96" size="450" color="white" frame="true" align="right" spinBox="true" caption="2b96, resolution 1.70Å" /> '''Third Calcium ion fo...
 
OCA (talk | contribs)
No edit summary
Line 1: Line 1:
[[Image:2b96.gif|left|200px]]<br /><applet load="2b96" size="450" color="white" frame="true" align="right" spinBox="true"  
[[Image:2b96.gif|left|200px]]<br /><applet load="2b96" size="350" color="white" frame="true" align="right" spinBox="true"  
caption="2b96, resolution 1.70&Aring;" />
caption="2b96, resolution 1.70&Aring;" />
'''Third Calcium ion found in an inhibitor bound phospholipase A2'''<br />
'''Third Calcium ion found in an inhibitor bound phospholipase A2'''<br />


==Overview==
==Overview==
The lipolytic enzyme phospholipase A2 plays a crucial role in lipid, metabolism and catalyzes hydrolysis of the fatty-acid ester bond at the, sn-2 position of phospholipids. Here, the crystal structure (1.7 A, resolution) of the triple mutant (K53,56,121M) of bovine pancreatic, phospholipase A2 complexed with an organic molecule, p-methoxybenzoic acid, (anisic acid), is reported. Residues 60-70 (the surface-loop residues) are, ordered and adopt conformations which are different from those normally, found in structures in which a second calcium ion is present. It is, interesting to note that for the first time a third calcium ion has been, identified. In addition, four Tris, (2-amino-2-hydroxymethyl-1,3-propanediol) molecules were located. It is, believed that one of the Tris molecules plays a role in clamping the third, calcium ion and that another is involved in controlling the dynamics of, the surface loop through hydrogen bonds.
The lipolytic enzyme phospholipase A2 plays a crucial role in lipid metabolism and catalyzes hydrolysis of the fatty-acid ester bond at the sn-2 position of phospholipids. Here, the crystal structure (1.7 A resolution) of the triple mutant (K53,56,121M) of bovine pancreatic phospholipase A2 complexed with an organic molecule, p-methoxybenzoic acid (anisic acid), is reported. Residues 60-70 (the surface-loop residues) are ordered and adopt conformations which are different from those normally found in structures in which a second calcium ion is present. It is interesting to note that for the first time a third calcium ion has been identified. In addition, four Tris (2-amino-2-hydroxymethyl-1,3-propanediol) molecules were located. It is believed that one of the Tris molecules plays a role in clamping the third calcium ion and that another is involved in controlling the dynamics of the surface loop through hydrogen bonds.


==About this Structure==
==About this Structure==
2B96 is a [http://en.wikipedia.org/wiki/Single_protein Single protein] structure of sequence from [http://en.wikipedia.org/wiki/Bos_taurus Bos taurus] with CA, CL, TRS and ANN as [http://en.wikipedia.org/wiki/ligands ligands]. Active as [http://en.wikipedia.org/wiki/Phospholipase_A(2) Phospholipase A(2)], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=3.1.1.4 3.1.1.4] Full crystallographic information is available from [http://ispc.weizmann.ac.il/oca-bin/ocashort?id=2B96 OCA].  
2B96 is a [http://en.wikipedia.org/wiki/Single_protein Single protein] structure of sequence from [http://en.wikipedia.org/wiki/Bos_taurus Bos taurus] with <scene name='pdbligand=CA:'>CA</scene>, <scene name='pdbligand=CL:'>CL</scene>, <scene name='pdbligand=TRS:'>TRS</scene> and <scene name='pdbligand=ANN:'>ANN</scene> as [http://en.wikipedia.org/wiki/ligands ligands]. Active as [http://en.wikipedia.org/wiki/Phospholipase_A(2) Phospholipase A(2)], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=3.1.1.4 3.1.1.4] Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2B96 OCA].  


==Reference==
==Reference==
Line 15: Line 15:
[[Category: Single protein]]
[[Category: Single protein]]
[[Category: Sekar, K.]]
[[Category: Sekar, K.]]
[[Category: Tsai, M.D.]]
[[Category: Tsai, M D.]]
[[Category: Velmurugan, D.]]
[[Category: Velmurugan, D.]]
[[Category: Yamane, T.]]
[[Category: Yamane, T.]]
Line 27: Line 27:
[[Category: triple mutant]]
[[Category: triple mutant]]


''Page seeded by [http://ispc.weizmann.ac.il/oca OCA ] on Wed Nov 21 08:38:53 2007''
''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Thu Feb 21 16:35:23 2008''