Sandbox27: Difference between revisions

Revision as of 02:21, 4 March 2009

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Chem 490A: Proteopedia Assignment

Meenal Datta

Information from 1kme.

Ligands:

BGC, RET, SQU

Structural annotation:
Resources:	CATH : 1Kmea00, 1Kmeb00 InterPro : Ipr001425 Pfam : PF01036 SCOP : d1kmea_, d1kmeb_ UniProt : P02945

Functional annotation:
Cellular component:	membrane integral to membrane
Biological process:	response to stimulus transport protein-chromophore linkage phototransduction ion transport proton transport
Molecular function:	hydrogen ion transmembrane transporter activity photoreceptor activity receptor activity ion channel activity

Evolutionary conservation:

Toggle Conservation Colors:	Rows = identical sequences:
Further Information:	Caveats, Explanation, Complete Results at ConSurfDB

Resources:

FirstGlance, OCA, PDBsum, RCSB

Coordinates:

save as pdb, mmCIF, xml

spinqualitylabelsall models

Crystal structure of bacteriorhodopsin crystallized from bicelles, Faham, S., Boweie, J.U.: 1kme

Drag the structure with the mouse to rotate

@@ Line 5: / Line 5: @@
 Meenal Datta
+Information from [[1kme]].
 {{STRUCTURE_1kme |  PDB=1kme  |  SCENE=  }}
 <applet load='1kme' size='300' frame='true' align='right' caption='Crystal structure of bacteriorhodopsin crystallized from bicelles, Faham, S., Boweie, J.U.: 1kme' />