User:Wayne Decatur/I-Ppo Morph Methods: Difference between revisions
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<nowiki> | <nowiki> | ||
<code> | <code> | ||
from Bio.PDB.PDBParser import PDBParser | from Bio.PDB.PDBParser import PDBParser <br> | ||
parser = PDBParser() | parser = PDBParser()<br> | ||
structure = parser.get_structure('test', 'test.pdb') | structure = parser.get_structure('test', 'test.pdb')<br> | ||
header = parser.get_header() | header = parser.get_header()<br> | ||
trailer = parser.get_trailer() | trailer = parser.get_trailer()<br> | ||
for model in structure: | for model in structure:<br> | ||
for chain in model: | for chain in model:<br> | ||
i = 2493 | i = 2493<br> | ||
for residue in chain: | for residue in chain:<br> | ||
residue.id = (' ', i, ' ') | residue.id = (' ', i, ' ')<br> | ||
i += 1 | i += 1<br> | ||
from Bio.PDB import PDBIO | from Bio.PDB import PDBIO<br> | ||
w = PDBIO() | w = PDBIO()<br> | ||
w.set_structure(structure) | w.set_structure(structure)<br> | ||
w.save('test-r1.pdb') | w.save('test-r1.pdb') | ||
<br> | |||
</code> | </code> | ||
</nowiki> | </nowiki> | ||
