Proteopedia:Problems: Difference between revisions

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<u><i>Workaround</i></u>: Use standard bullet list HTML notation instead of wikitext markup [[User:J Prilusky|J Prilusky]] 9:11 3 March 2008

'''~~Scenes~~ that have green displayed text that includes non-alphabetical characters like ampersands and greek letters''' do not display properly --[[User:Eran Hodis|Eran Hodis]] 17:24, 12 June 2008 (IDT)

'''Scene links that have green displayed text that includes non-alphabetical characters like ampersands and greek letters''' do not display properly --[[User:Eran Hodis|Eran Hodis]] 17:24, 12 June 2008 (IDT) (So if you try to add angstrom sign by code Å sometimes it will cause that green link not to show up and somonetimes even throws an XML error when you try to save the page. --[[User:Wayne Decatur|Wayne Decatur]] 4:27, 28 September 2009 (EST)

'''Models with >100,000 atoms''' fail to display due to java memory limitations. These are <0.1% of the PDB. I suggest that a box be inserted automatically (from a template) on such pages that explains why Jmol remains blank. We should test whether increasing the memory allocated to java reduces this problem, and if so, provide an explanation of how to increase java memory in Win and OS X. See also [http://bioportal.weizmann.ac.il/oca-docs/fgij/bigpdb.htm tests with big PDB files] and a [http://bip.weizmann.ac.il/oca-docs/PDBRecNamStats/PDBSizeDistribution.html list of the largest files in the PDB]. [[User:Eric Martz|Eric Martz]] 19:20, 13 April 2008 (IDT)

Proteopedia:Problems: Difference between revisions

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@@ Line 45: / Line 45: @@
 <u><i>Workaround</i></u>: Use standard bullet list HTML notation instead of wikitext markup  [[User:J Prilusky|J Prilusky]] 9:11 3 March 2008
-'''Scenes that have green displayed text that includes non-alphabetical characters like ampersands and greek letters''' do not display properly --[[User:Eran Hodis|Eran Hodis]] 17:24, 12 June 2008 (IDT)
+'''Scene links that have green displayed text that includes non-alphabetical characters like ampersands and greek letters''' do not display properly --[[User:Eran Hodis|Eran Hodis]] 17:24, 12 June 2008 (IDT) (So if you try to add angstrom sign by code &Aring; sometimes it will cause that green link not to show up and somonetimes even throws an XML error when you try to save the page. --[[User:Wayne Decatur|Wayne Decatur]] 4:27, 28 September 2009 (EST)
 '''Models with >100,000 atoms''' fail to display due to java memory limitations. These are <0.1% of the PDB. I suggest that a box be inserted automatically (from a template) on such pages that explains why Jmol remains blank. We should test whether increasing the memory allocated to java reduces this problem, and if so, provide an explanation of how to increase java memory in Win and OS X. See also [http://bioportal.weizmann.ac.il/oca-docs/fgij/bigpdb.htm tests with big PDB  files] and a [http://bip.weizmann.ac.il/oca-docs/PDBRecNamStats/PDBSizeDistribution.html list of the largest files in the PDB]. [[User:Eric Martz|Eric Martz]] 19:20, 13 April 2008 (IDT)