User:Wayne Decatur/3fpn Morph methods: Difference between revisions
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<scene name='3fpn_Morph_methods/Testmeasureanimwo18/1'>back and forth with wireframe and only monitors on 1.8 maybe?</scene> | <scene name='3fpn_Morph_methods/Testmeasureanimwo18/1'>back and forth with wireframe and only monitors on 1.8 maybe?</scene><br> | ||
<scene name='3fpn_Morph_methods/Palidromtest/1'>TextToBeDisplayed</scene> | <scene name='3fpn_Morph_methods/Palidromtest/1'>TextToBeDisplayed</scene> | ||
==Paper on the structure== | ==Paper on the structure== | ||
<ref group="xtra">PMID:19287003</ref><references group="xtra"/> | <ref group="xtra">PMID:19287003</ref><references group="xtra"/> | ||
Revision as of 05:42, 23 October 2009
Moving to match Figure 3
Using Pymol and the 3fpn file, I moved so interface is perpendicular to y axis:
translate [10,0,0], chain b
rotate y, 65, chain b
Saved molecule.
Morph from normal 3fpn structure to view in Figure 3 of article describing the structure
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Took the two files and submitted them. Since the structures didn't have nucleic acids, I took the advice here and used the Yale Morph Server for morphing complexes.
Uploaded to Proteopedia File:3fpntorotatedversion.pdb.
loaded '3fpntorotatedversion.pdb' in Scene Authoring Tools.
Test 1.8 wireframe and measures
back and forth with wireframe and only monitors on 1.8 maybe?
TextToBeDisplayed
Paper on the structure
- Pakotiprapha D, Liu Y, Verdine GL, Jeruzalmi D. A structural model for the damage-sensing complex in bacterial nucleotide excision repair. J Biol Chem. 2009 May 8;284(19):12837-44. Epub 2009 Mar 13. PMID:19287003 doi:10.1074/jbc.M900571200
